blup90iod2

How do OPTIONs work?

OPTION conv_crit1e-10

    Set convergence criterion (default 1e-10).

OPTION maxrounds10000

    Set maximum number of rounds (default 5000). If the number of rounds reaches the maximum, the last solutions and residuals will be saved for restart.

OPTION solv_methodFSPAK

    Select the solving method for initial equations by FSPAK or DIRECT (default DIRECT).

OPTION blksize3

    Set block size for preconditioner (default 1).

OPTION init_eq10

    Set the number of effects to be solved directly as initial equations (default 0).

OPTION cont

    Keep the last solutions and residuals for restart.

OPTION cont1

    Restart the program from the last run using the previous solutions.

OPTION residual

    Save solutions and errors.

OPTION tol 1d-12

    Tolerance for G-inverse (default 1d-12).

OPTION avgeps 30

    Use the average eps round as a convergence criterion (default 1).

OPTION missing -1

    Set the missing value (default 0).

OPTION SNP_file snp

    Specify the SNP file name to use genotype data.

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