Models
Animal model
DATAFILE
data.test
TRAITS
3
FIELDS_PASSED TO OUTPUT
5 6
WEIGHT(S)
RESIDUAL VARIANCE
5
EFFECT
1 cross alpha
EFFECT
2 cross alpha
RANDOM
animal
FILE
test.ped
FILE_POS
1 2 3 0 0
PED_DEPTH
5
(CO)VARIANCES
1
Multiple trait animal model
DATAFILE
data.test
TRAITS
3 4
FIELDS_PASSED TO OUTPUT
5 6
WEIGHT(S)
RESIDUAL VARIANCE
5 2
2 4
EFFECT
1 1 cross alpha
EFFECT
2 2 cross alpha
RANDOM
animal
FILE
test.ped
FILE_POS
1 2 3 0 0
PED_DEPTH
5
(CO)VARIANCES
2 1
1 2
Animal model with UPG
DATAFILE
data.test
TRAITS
3
FIELDS_PASSED TO OUTPUT
5 6
WEIGHT(S)
RESIDUAL VARIANCE
5
EFFECT
1 cross alpha
EFFECT
2 cross alpha
RANDOM
animal
FILE
test.ped
FILE_POS
1 2 3 0 4
PED_DEPTH
5
GEN_INT
1 3 10
UPG_TYPE
yob
1990 1995 2000 2005
(CO)VARIANCES
1
Repeatability model 1
DATAFILE
data.test
TRAITS
3 4
FIELDS_PASSED TO OUTPUT
5 6
WEIGHT(S)
RESIDUAL VARIANCE
5 2
2 4
EFFECT
1 1 cross alpha
EFFECT
2 2 cross alpha
RANDOM
animal
FILE
test.ped
FILE_POS
1 2 3 0 0
PED_DEPTH
5
(CO)VARIANCES
2 1
1 2
EFFECT
2 2 cross alpha
RANDOM
diagonal
(CO)VARIANCES_PE
2 1
1 2
Repeatability model 2
DATAFILE
data.test
TRAITS
3 4
FIELDS_PASSED TO OUTPUT
5 6
WEIGHT(S)
RESIDUAL VARIANCE
5 2
2 4
EFFECT
1 1 cross alpha
EFFECT
2 2 cross alpha
RANDOM
animal
OPTIONAL
pe
FILE
test.ped
FILE_POS
1 2 3 0 0
PED_DEPTH
5
(CO)VARIANCES
2 1
1 2
(CO)VARIANCES_PE
2 1
1 2
Maternal effect model
DATAFILE
data.test
TRAITS
3 4
FIELDS_PASSED TO OUTPUT
5 6
WEIGHT(S)
RESIDUAL VARIANCE
5 2
2 4
EFFECT
1 1 cross alpha
EFFECT
2 2 cross alpha
RANDOM
animal
OPTIONAL
mat
FILE
test.ped
FILE_POS
1 2 3 0 0
PED_DEPTH
5
(CO)VARIANCES
2 1 1 1
1 2 1 1
1 1 2 1
1 1 1 2
