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faq.renum_example [2018/10/18 14:40] shogo [Repeatability model 2] |
faq.renum_example [2018/10/18 15:51] shogo [Random regression model] |
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1 2 | 1 2 | ||
</file> | </file> | ||
- | ===== Random regression model ===== | + | ===== Random regression model 1 ===== |
<file> | <file> | ||
DATAFILE | DATAFILE | ||
Line 173: | Line 173: | ||
EFFECT | EFFECT | ||
7 cross alpha | 7 cross alpha | ||
+ | EFFECT | ||
+ | 2 cov | ||
+ | EFFECT | ||
+ | 3 cov | ||
+ | EFFECT | ||
+ | 4 cov | ||
+ | EFFECT | ||
+ | 5 cov | ||
EFFECT | EFFECT | ||
6 cross alpha | 6 cross alpha | ||
RANDOM | RANDOM | ||
animal | animal | ||
+ | OPTIONAL | ||
+ | pe | ||
FILE | FILE | ||
rrm.ped | rrm.ped | ||
Line 186: | Line 196: | ||
<file> | <file> | ||
rrm.dat | rrm.dat | ||
+ | 1 -1.00000 1.00000 -1.00000 1.00000 1 1 1 11 | ||
+ | 2 -0.77778 0.40741 -0.00960 -0.29249 2 1 1 12 | ||
+ | 3 -0.55556 -0.03704 0.40466 -0.36565 3 1 1 13 | ||
+ | 4 -0.33333 -0.33333 0.40741 0.01235 4 2 1 13 | ||
+ | 5 -0.11111 -0.48148 0.16324 0.32937 5 2 1 12 | ||
+ | 6 0.11111 -0.48148 -0.16324 0.32937 6 2 1 11 | ||
+ | 7 0.33333 -0.33333 -0.40741 0.01235 7 3 1 12 | ||
+ | 8 0.55556 -0.03704 -0.40466 -0.36565 8 3 1 13 | ||
+ | 9 0.77778 0.40741 0.00960 -0.29249 9 3 1 14 | ||
+ | 10 1.00000 1.00000 1.00000 1.00000 10 3 1 15 | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | : | ||
</file> | </file> | ||
<file> | <file> | ||
rrm.ped | rrm.ped | ||
+ | 1 0 0 | ||
+ | 2 0 0 | ||
+ | 3 0 0 | ||
+ | 4 0 0 | ||
+ | 5 1 0 | ||
+ | 6 1 4 | ||
+ | 7 2 0 | ||
+ | 8 2 4 | ||
+ | 9 2 0 | ||
+ | 10 3 5 | ||
</file> | </file> | ||
+ | <file> | ||
+ | renf90.par | ||
+ | DATAFILE | ||
+ | renf90.dat | ||
+ | NUMBER_OF_TRAITS | ||
+ | 1 | ||
+ | NUMBER_OF_EFFECTS | ||
+ | 13 | ||
+ | OBSERVATION(S) | ||
+ | 1 | ||
+ | WEIGHT(S) | ||
+ | |||
+ | EFFECTS: POSITIONS_IN_DATAFILE NUMBER_OF_LEVELS TYPE_OF_EFFECT[EFFECT NESTED] | ||
+ | 6 3 cross | ||
+ | 7 1 cov | ||
+ | 8 1 cov | ||
+ | 9 1 cov | ||
+ | 10 1 cov | ||
+ | 2 10 cov 11 | ||
+ | 3 10 cov 11 | ||
+ | 4 10 cov 11 | ||
+ | 5 10 cov 11 | ||
+ | 2 10 cov 11 | ||
+ | 3 10 cov 11 | ||
+ | 4 10 cov 11 | ||
+ | 5 10 cov 11 | ||
+ | RANDOM_RESIDUAL VALUES | ||
+ | 1.0000000 | ||
+ | RANDOM_GROUP | ||
+ | 6 7 8 9 | ||
+ | RANDOM_TYPE | ||
+ | add_animal | ||
+ | FILE | ||
+ | renadd06.ped | ||
+ | (CO)VARIANCES | ||
+ | 1.0000000 0.1000000 0.1000000 0.1000000 | ||
+ | 0.1000000 1.0000000 0.1000000 0.1000000 | ||
+ | 0.1000000 0.1000000 1.0000000 0.1000000 | ||
+ | 0.1000000 0.1000000 0.1000000 1.0000000 | ||
+ | RANDOM_GROUP | ||
+ | 10 11 12 13 | ||
+ | RANDOM_TYPE | ||
+ | diagonal | ||
+ | FILE | ||
+ | | ||
+ | (CO)VARIANCES | ||
+ | 1.0000000 0.1000000 0.1000000 0.1000000 | ||
+ | 0.1000000 1.0000000 0.1000000 0.1000000 | ||
+ | 0.1000000 0.1000000 1.0000000 0.1000000 | ||
+ | 0.1000000 0.1000000 0.1000000 1.0000000 | ||
+ | </file> | ||
+ | |||
===== Maternal effect model ===== | ===== Maternal effect model ===== | ||
<file> | <file> |