faq.renum_example
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| faq.renum_example [2018/10/18 14:40] – [Repeatability model 2] shogo | faq.renum_example [2024/03/25 18:22] (current) – external edit 127.0.0.1 | ||
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| Line 159: | Line 159: | ||
| 1 2 | 1 2 | ||
| </ | </ | ||
| - | ===== Random regression model ===== | + | ===== Random regression model 1 ===== |
| < | < | ||
| DATAFILE | DATAFILE | ||
| Line 173: | Line 173: | ||
| EFFECT | EFFECT | ||
| 7 cross alpha | 7 cross alpha | ||
| + | EFFECT | ||
| + | 2 cov | ||
| + | EFFECT | ||
| + | 3 cov | ||
| + | EFFECT | ||
| + | 4 cov | ||
| + | EFFECT | ||
| + | 5 cov | ||
| EFFECT | EFFECT | ||
| 6 cross alpha | 6 cross alpha | ||
| RANDOM | RANDOM | ||
| animal | animal | ||
| + | OPTIONAL | ||
| + | pe | ||
| FILE | FILE | ||
| rrm.ped | rrm.ped | ||
| Line 186: | Line 196: | ||
| < | < | ||
| rrm.dat | rrm.dat | ||
| + | 1 -1.00000 1.00000 -1.00000 1.00000 | ||
| + | 2 -0.77778 0.40741 -0.00960 -0.29249 | ||
| + | 3 -0.55556 -0.03704 0.40466 -0.36565 | ||
| + | 4 -0.33333 -0.33333 0.40741 0.01235 | ||
| + | 5 -0.11111 -0.48148 0.16324 0.32937 | ||
| + | 6 0.11111 -0.48148 -0.16324 0.32937 | ||
| + | 7 0.33333 -0.33333 -0.40741 0.01235 | ||
| + | 8 0.55556 -0.03704 -0.40466 -0.36565 | ||
| + | 9 0.77778 0.40741 0.00960 -0.29249 | ||
| + | 10 1.00000 1.00000 1.00000 1.00000 | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | : | ||
| </ | </ | ||
| < | < | ||
| rrm.ped | rrm.ped | ||
| + | 1 0 0 | ||
| + | 2 0 0 | ||
| + | 3 0 0 | ||
| + | 4 0 0 | ||
| + | 5 1 0 | ||
| + | 6 1 4 | ||
| + | 7 2 0 | ||
| + | 8 2 4 | ||
| + | 9 2 0 | ||
| + | 10 3 5 | ||
| </ | </ | ||
| + | < | ||
| + | renf90.par | ||
| + | DATAFILE | ||
| + | | ||
| + | NUMBER_OF_TRAITS | ||
| + | 1 | ||
| + | NUMBER_OF_EFFECTS | ||
| + | 13 | ||
| + | OBSERVATION(S) | ||
| + | 1 | ||
| + | WEIGHT(S) | ||
| + | |||
| + | EFFECTS: POSITIONS_IN_DATAFILE NUMBER_OF_LEVELS TYPE_OF_EFFECT[EFFECT NESTED] | ||
| + | | ||
| + | 7 1 cov | ||
| + | 8 1 cov | ||
| + | 9 1 cov | ||
| + | 10 1 cov | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | RANDOM_RESIDUAL VALUES | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | FILE | ||
| + | renadd06.ped | ||
| + | (CO)VARIANCES | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | 10 11 12 13 | ||
| + | | ||
| + | | ||
| + | FILE | ||
| + | | ||
| + | (CO)VARIANCES | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | </ | ||
| + | |||
| ===== Maternal effect model ===== | ===== Maternal effect model ===== | ||
| < | < | ||
faq.renum_example.1539873611.txt.gz · Last modified: 2024/03/25 18:22 (external edit)