how_to_fit_haplotype_effects
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| how_to_fit_haplotype_effects [2012/05/15 09:40] – andres | how_to_fit_haplotype_effects [2012/05/15 14:23] – andres | ||
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| - | __How to include haplotype effects in BLUPF90__ | + | ====How |
| Including haplotypic effects is quite complicated because, for each record // | Including haplotypic effects is quite complicated because, for each record // | ||
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| //y = μ + h< | //y = μ + h< | ||
| - | Where //h// is an haplotypic effect (3 levels) and t is a cross-classified effect (5 levels). I have prepared a small example. | + | Where //h// is an haplotypic effect (3 levels) and //t// is a cross-classified effect (5 levels). I have prepared a small example. |
| < | < | ||
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| The first column is //y//, the second //µ//, 3rd-5th is the number of copies of the haplotype of interest, the 6th column is the effect //t// with 5 levels. The “1 2 3” indicate which is the haplotype associated to the number of copies in 3rd-5th columns. Note, for instance, that the 5th record has 2 copies of the third haplotype. The par file is thus: | The first column is //y//, the second //µ//, 3rd-5th is the number of copies of the haplotype of interest, the 6th column is the effect //t// with 5 levels. The “1 2 3” indicate which is the haplotype associated to the number of copies in 3rd-5th columns. Note, for instance, that the 5th record has 2 copies of the third haplotype. The par file is thus: | ||
| - | < | + | < |
| DATAFILE | DATAFILE | ||
| data | data | ||
how_to_fit_haplotype_effects.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1