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readme.accgs [2017/11/17 21:20] shogo |
readme.accgs [2021/03/15 21:11] (current) shogo [Options] |
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OPTION DiagG_file DiagG | OPTION DiagG_file DiagG | ||
</file> | </file> | ||
- | Read a "DiagG" binary file created by preGSf90 with "OPTION saveDiagG". | + | Read a "DiagG" binary file created by preGSf90 with "OPTION saveDiagG". This option is most stable for many breeds or species. |
<file> | <file> | ||
- | OPTION Ginv_file DiagGimA22i_ren.txt | + | OPTION DiagGinv_file DiagGimA22i_ren.txt |
</file> | </file> | ||
- | Read a DiagGimA22i_ren.txt file created by preGSf90. With this beta version, the text file "DiagGimA22i_ren.txt" can be created by preGSf90 using "OPTION saveDiagGimA22iRen" before running accf90GS. | + | Read a DiagGimA22i_ren.txt file created by preGSf90. With this beta version, the text file "DiagGimA22i_ren.txt" can be created by preGSf90 using "OPTION saveDiagGimA22iRen" before running accf90GS. This option may not work well in some cases. |
<file> | <file> | ||
OPTION G_file G | OPTION G_file G | ||
</file> | </file> | ||
- | Read a G file created by preGSf90. The binary file "G" can be created by preGSf90 using "OPTION saveG" before running accf90GS. This option is required when using the following option: "sum_rel". | + | Read a G file created by preGSf90. The binary file "G" can be created by preGSf90 using "OPTION saveG" before running accf90GS. This option is required when using the following option: "sum_rel". This option may not work well in some cases. |
<file> | <file> | ||
OPTION sum_rel avg x.xxx | OPTION sum_rel avg x.xxx | ||
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xx = no: multiplied by REL(i), pa: multiplied by REL(PA), or yes: multiplied by REL(j)-REL(PA). | xx = no: multiplied by REL(i), pa: multiplied by REL(PA), or yes: multiplied by REL(j)-REL(PA). | ||
<file> | <file> | ||
- | OPTION rel 0.5 | + | OPTION rel 0.5 0.3 |
</file> | </file> | ||
- | Rescale reliability if necessary. | + | Rescale reliability for traits 1 and 2 if necessary. |
<file> | <file> | ||
- | OPTION relm 0.5 | + | OPTION relm 0.5 0.3 |
</file> | </file> | ||
- | Rescale reliability for maternal effect if necessary. | + | Rescale reliability for maternal effect for traits 1 and 2 if necessary. |