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readme.accgs [2017/11/17 21:20]
shogo
readme.accgs [2021/03/15 21:11] (current)
shogo [Options]
Line 59: Line 59:
 OPTION DiagG_file DiagG OPTION DiagG_file DiagG
 </​file>​ </​file>​
-Read a "​DiagG"​ binary file created by preGSf90 with "​OPTION saveDiagG"​.+Read a "​DiagG"​ binary file created by preGSf90 with "​OPTION saveDiagG"​. This option is most stable for many breeds or species.
 <​file>​ <​file>​
-OPTION ​Ginv_file ​DiagGimA22i_ren.txt+OPTION ​DiagGinv_file ​DiagGimA22i_ren.txt
 </​file>​ </​file>​
-Read a DiagGimA22i_ren.txt file created by preGSf90. With this beta version, the text file "​DiagGimA22i_ren.txt"​ can be created by preGSf90 using "​OPTION saveDiagGimA22iRen"​ before running accf90GS.+Read a DiagGimA22i_ren.txt file created by preGSf90. With this beta version, the text file "​DiagGimA22i_ren.txt"​ can be created by preGSf90 using "​OPTION saveDiagGimA22iRen"​ before running accf90GS. This option may not work well in some cases.
 <​file>​ <​file>​
 OPTION G_file G OPTION G_file G
 </​file>​ </​file>​
-Read a G file created by preGSf90. The binary file "​G"​ can be created by preGSf90 using "​OPTION saveG" before running accf90GS. This option is required when using the following option: "​sum_rel"​.+Read a G file created by preGSf90. The binary file "​G"​ can be created by preGSf90 using "​OPTION saveG" before running accf90GS. This option is required when using the following option: "​sum_rel"​. This option may not work well in some cases.
 <​file>​ <​file>​
 OPTION sum_rel avg x.xxx OPTION sum_rel avg x.xxx
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 xx = no: multiplied by REL(i), pa: multiplied by REL(PA), or yes: multiplied by REL(j)-REL(PA). xx = no: multiplied by REL(i), pa: multiplied by REL(PA), or yes: multiplied by REL(j)-REL(PA).
 <​file>​ <​file>​
-OPTION rel 0.5+OPTION rel 0.5 0.3
 </​file>​ </​file>​
-Rescale reliability if necessary.+Rescale reliability ​for traits 1 and 2 if necessary.
 <​file>​ <​file>​
-OPTION relm 0.5+OPTION relm 0.5 0.3
 </​file>​ </​file>​
-Rescale reliability for maternal effect if necessary. +Rescale reliability for maternal effect ​for traits 1 and 2 if necessary.
  
readme.accgs.1510953606.txt.gz · Last modified: 2017/11/17 21:20 by shogo