This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
readme.aireml [2019/07/22 23:00] shogo [Options] |
readme.aireml [2020/11/12 20:15] (current) shogo [Options] |
||
---|---|---|---|
Line 9: | Line 9: | ||
===== Options ===== | ===== Options ===== | ||
<file> | <file> | ||
- | OPTION conv_crit 1d-12 | + | OPTION conv_crit 1d-10 |
</file> | </file> | ||
- | Convergence criterion (default 1d-10). | + | Convergence criterion (default 1d-12). |
<file> | <file> | ||
- | OPTION maxrounds 1000 | + | OPTION maxrounds n |
</file> | </file> | ||
- | Maximum rounds (default 5000). When the number = 0, the program calculates BLUP without iterating REML and some statistics (-2logL, AIC, SE for (co)variances, ...). | + | Maximum rounds (default 5000). When n = 0, the program calculates BLUP without iterating REML and provides some statistics (-2logL, AIC, SE for (co)variances, ...). |
<file> | <file> | ||
- | OPTION EM-REML 10 | + | OPTION EM-REML n |
</file> | </file> | ||
- | Run EM-REML (REMLF90) for first 10 rounds to get initial variances within the parameter space (default 0). | + | Run EM-REML (REMLF90) for first n rounds to get initial starting variances for AIREMLF90 within the parameter space (default 0). With n is large (e.g., 1000, 10000, ....), AIREMLF90 runs as REMLF90 until convergence, and then switching back to AIREMLF90. |
<file> | <file> | ||
OPTION use_yams | OPTION use_yams |