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readme.aireml [2019/07/22 23:00]
shogo [Options]
readme.aireml [2020/11/12 20:15] (current)
shogo [Options]
Line 9: Line 9:
 ===== Options ===== ===== Options =====
 <​file>​ <​file>​
-OPTION conv_crit 1d-12+OPTION conv_crit 1d-10
 </​file>​ </​file>​
-Convergence criterion (default 1d-10).+Convergence criterion (default 1d-12).
 <​file>​ <​file>​
-OPTION maxrounds ​1000+OPTION maxrounds ​n
 </​file>​ </​file>​
-Maximum rounds (default 5000). When the number ​= 0, the program calculates BLUP without iterating REML and some statistics (-2logL, AIC, SE for (co)variances,​ ...).+Maximum rounds (default 5000). When = 0, the program calculates BLUP without iterating REML and provides ​some statistics (-2logL, AIC, SE for (co)variances,​ ...).
 <​file>​ <​file>​
-OPTION EM-REML ​10+OPTION EM-REML ​n
 </​file>​ </​file>​
-Run EM-REML (REMLF90) for first 10 rounds to get initial variances within the parameter space (default 0).+Run EM-REML (REMLF90) for first rounds to get initial ​starting ​variances ​for AIREMLF90 ​within the parameter space (default 0). With n is large (e.g., 1000, 10000, ....), AIREMLF90 runs as REMLF90 until convergence,​ and then switching back to AIREMLF90.
 <​file>​ <​file>​
 OPTION use_yams OPTION use_yams
readme.aireml.1563836406.txt.gz ยท Last modified: 2019/07/22 23:00 by shogo