User Tools

Site Tools


readme.gibbs3

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Last revision Both sides next revision
readme.gibbs3 [2016/01/05 21:27]
shogo
readme.gibbs3 [2019/05/14 02:21]
yutaka
Line 32: Line 32:
 </​file>​ </​file>​
 The position "​5"​ to identify the interval in the data file and the number of intervals "​10"​ for heterogeneous residual variances. The position "​5"​ to identify the interval in the data file and the number of intervals "​10"​ for heterogeneous residual variances.
 +
 +<​file>​
 +OPTION fixed_var all 1 2 3
 +</​file>​
 +All solutions and posterior means and SD for effects for effects1, 2, and 3 are stored in "​all_solutions"​ and in "​final_solutions"​ every round using fixed variances. Without numbers, all solutions for all effects are stored. ​
 +<​file>​
 +OPTION fixed_var mean 1 2 3
 +</​file>​
 +Posterior means and SD for effects1, 2, and 3 in "​final_solutions"​.
 +
 <​file>​ <​file>​
-OPTION hetres_var 
 x11 x12 x13 x11 x12 x13
 x21 x22 x23 x21 x22 x23
Line 47: Line 56:
 z31 z32 z33 z31 z32 z33
 </​file>​ </​file>​
-Give residual covariances for each interval (e.g., x, y, and z). +When ''​fixed_var''​ is used, you should provide the residual (co)variances in the file ''​hetres''​. 
-<file> +Give residual covariances for each interval
-OPTION fixed_var all 1 2 3 +For example, in the above file, we assume a 3 trait-model and each covariance matrix is 3 x 3 (e.g., x, y, and z). 
-</file+Note that the older version reads the variance components from the parameter ​file. 
-All solutions and posterior means and SD for effects for effects1, 2, and 3 are stored in "all_solutions" and in "​final_solutions"​ every round using fixed variances. Without numbers, all solutions for all effects are stored.  +The current version reads the external ​file "hetres" and the variance components included ​in the parameter file will not be used any more
-<​file>​ +
-OPTION fixed_var mean 1 2 3 +
-</​file>​ +
-Posterior means and SD for effects1, 2, and 3 in "​final_solutions"​.+
 <​file>​ <​file>​
 OPTION solution all 1 2 3 OPTION solution all 1 2 3
 </​file>​ </​file>​
 +Caution: this option will create a huge output solution file when you run many rounds and/or use a large model.
 All solutions and posterior means and SD for effects1, 2, and 3 are stored in "​all_solutions"​ and in "​final_solutions"​ every round. Without numbers, all solutions for all effects are stored. All solutions and posterior means and SD for effects1, 2, and 3 are stored in "​all_solutions"​ and in "​final_solutions"​ every round. Without numbers, all solutions for all effects are stored.
 <​file>​ <​file>​
 OPTION solution mean 1 2 3 OPTION solution mean 1 2 3
 </​file>​ </​file>​
 +Caution: this option will create a huge output solution file when you run many rounds and/or use a large model.
 Posterior means and SD for effects1, 2, and 3 in "​final_solutions"​. Posterior means and SD for effects1, 2, and 3 in "​final_solutions"​.
 <​file>​ <​file>​
readme.gibbs3.txt · Last modified: 2021/03/02 20:53 by shogo