Differences

This shows you the differences between two versions of the page.

--- readme.gibbs3 [2018/04/12 20:28] – [Running] shogo
+++ readme.gibbs3 [2019/05/14 02:21] – yutaka
@@ Line 32: / Line 32: @@
 </file>
 The position "5" to identify the interval in the data file and the number of intervals "10" for heterogeneous residual variances.
+<file>
+OPTION fixed_var all 1 2 3
+</file>
+All solutions and posterior means and SD for effects for effects1, 2, and 3 are stored in "all_solutions" and in "final_solutions" every round using fixed variances. Without numbers, all solutions for all effects are stored.
+<file>
+OPTION fixed_var mean 1 2 3
+</file>
+Posterior means and SD for effects1, 2, and 3 in "final_solutions".
 <file>
-OPTION hetres_var
 x11 x12 x13
 x21 x22 x23
@@ Line 47: / Line 56: @@
 z31 z32 z33
 </file>
-Give residual covariances for each interval (e.g., x, y, and z).
+When ''fixed_var'' is used, you should provide the residual (co)variances in the file ''hetres''.
-<file>
+Give residual covariances for each interval.
-OPTION fixed_var all 1 2 3
+For example, in the above file, we assume a 3 trait-model and each covariance matrix is 3 x 3 (e.g., x, y, and z).
-</file>
+Note that the older version reads the variance components from the parameter file.
-All solutions and posterior means and SD for effects for effects1, 2, and 3 are stored in "all_solutions" and in "final_solutions" every round using fixed variances. Without numbers, all solutions for all effects are stored.
+The current version reads the external file "hetres" and the variance components included in the parameter file will not be used any more.
-<file>
-OPTION fixed_var mean 1 2 3
-</file>
-Posterior means and SD for effects1, 2, and 3 in "final_solutions".
 <file>
 OPTION solution all 1 2 3