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readme.gibbs3 [2018/04/12 20:28]
shogo [Running]
readme.gibbs3 [2019/05/14 02:21] (current)
yutaka
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 </​file>​ </​file>​
 The position "​5"​ to identify the interval in the data file and the number of intervals "​10"​ for heterogeneous residual variances. The position "​5"​ to identify the interval in the data file and the number of intervals "​10"​ for heterogeneous residual variances.
 +
 +<​file>​
 +OPTION fixed_var all 1 2 3
 +</​file>​
 +All solutions and posterior means and SD for effects for effects1, 2, and 3 are stored in "​all_solutions"​ and in "​final_solutions"​ every round using fixed variances. Without numbers, all solutions for all effects are stored. ​
 +<​file>​
 +OPTION fixed_var mean 1 2 3
 +</​file>​
 +Posterior means and SD for effects1, 2, and 3 in "​final_solutions"​.
 +
 <​file>​ <​file>​
-OPTION hetres_var 
 x11 x12 x13 x11 x12 x13
 x21 x22 x23 x21 x22 x23
Line 47: Line 56:
 z31 z32 z33 z31 z32 z33
 </​file>​ </​file>​
-Give residual covariances for each interval (e.g., x, y, and z). +When ''​fixed_var''​ is used, you should provide the residual (co)variances in the file ''​hetres''​. 
-<file> +Give residual covariances for each interval
-OPTION fixed_var all 1 2 3 +For example, in the above file, we assume a 3 trait-model and each covariance matrix is 3 x 3 (e.g., x, y, and z). 
-</file+Note that the older version reads the variance components from the parameter ​file. 
-All solutions and posterior means and SD for effects for effects1, 2, and 3 are stored in "all_solutions" and in "​final_solutions"​ every round using fixed variances. Without numbers, all solutions for all effects are stored.  +The current version reads the external ​file "hetres" and the variance components included ​in the parameter file will not be used any more
-<​file>​ +
-OPTION fixed_var mean 1 2 3 +
-</​file>​ +
-Posterior means and SD for effects1, 2, and 3 in "​final_solutions"​.+
 <​file>​ <​file>​
 OPTION solution all 1 2 3 OPTION solution all 1 2 3
readme.gibbs3.txt · Last modified: 2019/05/14 02:21 by yutaka