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readme.illumina2pregs [2019/09/27 00:17] ignacio [Input files] |
readme.illumina2pregs [2019/09/27 00:36] ignacio [Input files] |
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====Input files==== | ====Input files==== | ||
- | ''SNP_Map.txt'' | + | ''SNP_Map.txt'' |
- | 1 Index | + | |
- | 2 Name | + | The following fields should be present in the SNP_Map.txt file, |
- | 3 Chromosome | + | |
- | 4 Position | + | Any order of columns is supported. |
- | 5 GenTrain | + | |
- | 6 Score | + | Column positions will be assumed based on the keywords: |
- | 7 SNP | + | * Name |
- | 8 ILMN | + | * Chromosome |
- | 9 Strand | + | * Position |
- | 10 Customer | + | Other fields will be ignored |
- | 11 Strand | + | |
- | 12 NormID | + | |
+ | ''FinalReport.txt'' | ||
- | ''FinalReport.txt''. | ||
The following fields should be present in the Final Report file, Any order of columns is supported. | The following fields should be present in the Final Report file, Any order of columns is supported. | ||
+ | |||
Column positions will be assumed based on the keywords: | Column positions will be assumed based on the keywords: | ||
- | SNP_Name | + | * SNP_Name |
- | Sample ID | + | * Sample ID |
- | Allele2 - AB | + | * Allele2 - AB |
- | Allele1 - AB | + | * Allele1 - AB |
Optional fields: | Optional fields: | ||
- | GC Score | + | * GC Score |
+ | Other fields will be ignored. | ||
====Output files==== | ====Output files==== |