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readme.pedictf90 [2020/03/13 19:08]
yutaka
readme.pedictf90 [2020/03/13 19:10]
yutaka
Line 12: Line 12:
   * residual = y - included effects (not a true residual)   * residual = y - included effects (not a true residual)
  
-==== More explanation ​==== +==== Example ​====
- +
-This program splits the phenotype (y) into 3 pieces. +
- +
-  y = (effects to be corrected) + (effects to be kept) + residual +
- +
-In a cross validation, you need a quantity "EBV + residual",​ where EBV is ''​(effects to be kept)''​ shown above, and it is ''​y_star''​. +
-The program calculates the following quantities. +
- +
-  * y_hat: ''​(effects to kept)''​ +
-  * y_star: ''​y - (effects to be corrected)''​ +
-  * residual: ''​residual''​ +
- +
-The user should specify the effects to be kept using ''​OPTION include_effects''​. +
- +
-=== Example ​===+
  
 For instance consider For instance consider
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 In addition, if animal effect is in the model, it produces a file with ebvs from the solutions file. In addition, if animal effect is in the model, it produces a file with ebvs from the solutions file.
 +
 +==== More explanation ====
 +
 +This program splits the phenotype (y) into 3 pieces.
 +
 +  y = (effects to be corrected) + (effects to be kept) + residual
 +
 +In a cross validation, you need a quantity "EBV + residual",​ where EBV is ''​(effects to be kept)''​ shown above, and it is ''​y_star''​.
 +The program calculates the following quantities.
 +
 +  * y_hat: ''​(effects to kept)''​
 +  * y_star: ''​y - (effects to be corrected)''​
 +  * residual: ''​residual''​
 +
 +The user should specify the effects to be kept using ''​OPTION include_effects''​ with the effect numbers.
 +For example, if the breeding value is in the 3rd row in the EFFECTS section in the parameter file, you have to use ''​OPTION include_effects 3''​.
  
 ==== Output files ==== ==== Output files ====
readme.pedictf90.txt · Last modified: 2020/03/13 19:10 by yutaka