readme.pedictf90
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readme.pedictf90 [2020/03/13 19:10] – yutaka | readme.pedictf90 [2020/03/13 19:10] – yutaka | ||
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* residual = y - included effects (not a true residual) | * residual = y - included effects (not a true residual) | ||
- | ==== More explanation | + | ==== Example |
- | + | ||
- | This program splits the phenotype (y) into 3 pieces. | + | |
- | + | ||
- | y = (effects to be corrected) + (effects to be kept) + residual | + | |
- | + | ||
- | In a cross validation, you need a quantity "EBV + residual", | + | |
- | The program calculates the following quantities. | + | |
- | + | ||
- | * y_hat: '' | + | |
- | * y_star: '' | + | |
- | * residual: '' | + | |
- | + | ||
- | The user should specify the effects to be kept using '' | + | |
- | For example, if the breeding value is in the 3rd row in the EFFECTS section in the parameter file, you have to use '' | + | |
- | + | ||
- | === Example | + | |
For instance consider | For instance consider | ||
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In addition, if animal effect is in the model, it produces a file with ebvs from the solutions file. | In addition, if animal effect is in the model, it produces a file with ebvs from the solutions file. | ||
+ | |||
+ | ==== More explanation ==== | ||
+ | |||
+ | This program splits the phenotype (y) into 3 pieces. | ||
+ | |||
+ | y = (effects to be corrected) + (effects to be kept) + residual | ||
+ | |||
+ | In a cross validation, you need a quantity "EBV + residual", | ||
+ | The program calculates the following quantities. | ||
+ | |||
+ | * y_hat: '' | ||
+ | * y_star: '' | ||
+ | * residual: '' | ||
+ | |||
+ | The user should specify the effects to be kept using '' | ||
+ | For example, if the breeding value is in the 3rd row in the EFFECTS section in the parameter file, you have to use '' | ||
==== Output files ==== | ==== Output files ==== |