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readme.pregsf90 [2019/07/26 21:57]
ignacio [Input files]
readme.pregsf90 [2019/09/04 17:31] (current)
ignacio [Quality Control (QC) for G]
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 <​file>​OPTION sex_chr n</​file>​ <​file>​OPTION sex_chr n</​file>​
 Chromosomes number equal or greater than //n// are not consider autosomes.\\ Chromosomes number equal or greater than //n// are not consider autosomes.\\
-If selected this option, sex chromosomes will not be used for checking parent-progeny Mendelian conflicts ​and HWE\\+If selected this option, sex chromosomes will not be used for checking parent-progeny Mendelian conflicts,  ​HWE and heritability of gene content\\
 but they will be included for all remaining processes. **If you want to remove sex chromosomes**,​ which we do recommend, use ''​OPTION excludeCHR''​. but they will be included for all remaining processes. **If you want to remove sex chromosomes**,​ which we do recommend, use ''​OPTION excludeCHR''​.
    
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 The test is useful for homogenous populations (breeds) but theory does not hold for crossbred animals. ​ The test is useful for homogenous populations (breeds) but theory does not hold for crossbred animals. ​
  This test uses explicitly inv(A22) so it is not suitable for very large populations.  This test uses explicitly inv(A22) so it is not suitable for very large populations.
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readme.pregsf90.txt ยท Last modified: 2019/09/04 17:31 by ignacio