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| readme.renumf90 [2020/04/21 05:13] – yutaka | readme.renumf90 [2020/04/21 06:03] – yutaka |
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| The program accepts one of the following keywords in ''UPG_TYPE'': ''group'', ''group_unisex'', and ''group_sex''. | The program accepts one of the following keywords in ''UPG_TYPE'': ''group'', ''group_unisex'', and ''group_sex''. |
| With one of these options, the program looks at a particular column in the pedigree file as a group code and use it for assigning the UPG code. If an animal has a missing parent, the program assigns an UPG code based on the group code. | With one of these options, the program looks at a particular column in the pedigree file as a group code and use it for assigning the UPG code. If an animal has a missing parent, the program assigns a UPG code based on the group code. |
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| * ''group_unisex'': The program assign an UPG code to the unknown parent regardless of the parent's sex. | * ''group_unisex'': The program assigns a UPG code to the unknown parent regardless of the parent's sex. |
| * ''group'': The program assign a separate UPG code to the unknown sire and dam. | * ''group'': The program assigns a separate UPG code to the unknown sire and dam. |
| * ''group_sex'': The user can specify a sex-specific UPG in the original pedigree file. | * ''group_sex'': The user can specify a sex-specific UPG in the original pedigree file. |
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| For ''group_unisex'' and ''group'', the column in the pedigree file is specified with the 6th item in ''FILE_POS''. The following example tells the program the 5th column in the pedigree file as the group code. The group code will be treated as characters. | For ''group_unisex'' and ''group'', the column in the pedigree file is specified with the 6th item in ''FILE_POS''. The following example tells the program the 5th column in the pedigree file as the group code. The group code will be treated as characters. |
| 1 2 3 0 0 5 | 1 2 3 0 0 5 |
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| For ''group_sex'', you need two additional columns in the pedigree file: one is for unknown sire and the other is for unknown dam. For example, assume the 5th column is for unknown sire and the 6th column is for unknown dam, the ''FILE_POS'' entry has 7 items. | For ''group_sex'', you need two additional columns in the pedigree file: one is for an unknown sire, and the other is for an unknown dam. For example, assume the 5th column is for unknown sire, and the 6th column is for unknown dam, the ''FILE_POS'' entry has 7 items. |
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| FILE_POS | FILE_POS |
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| The program now accept 3, 5, 6, or 7 items in ''FILE_POS''. | The program now accept 3, 5, 6, or 7 items in ''FILE_POS''. |
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| =====Extra comments===== | =====Extra comments===== |
