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readme.thrgibbs3 [2016/01/05 21:42] shogoreadme.thrgibbs3 [2018/04/12 20:31] – [Options] shogo
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 OPTION solution all OPTION solution all
 </file> </file>
 +Caution: this option will create a huge output solution file when you run many rounds and/or use a large model.
 Store all samples for solutions in "all_solutions" and posterior means and SD for all effects. The file "all_solutions" could be very large. Store all samples for solutions in "all_solutions" and posterior means and SD for all effects. The file "all_solutions" could be very large.
 <file> <file>
 OPTION solution all 1 2 3 OPTION solution all 1 2 3
 </file> </file>
 +Caution: this option will create a huge output solution file when you run many rounds and/or use a large model.
 Store all samples for solutions in "all_solutions" and posterior means and SD for 1, 2, and 3 effects. The file "all_solutions" could be very large. Store all samples for solutions in "all_solutions" and posterior means and SD for 1, 2, and 3 effects. The file "all_solutions" could be very large.
 <file> <file>
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 OPTION residual 1 OPTION residual 1
 </file> </file>
-Set the residual variance = 1.+Set the residual variance = 1. For binary traits, the residual variance is automatically set to 1, so no need to use this option.
 <file> <file>
 OPTION pos_def OPTION pos_def
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 </file> </file>
 Give residual covariances for each interval (e.g., x, y, and z). Give residual covariances for each interval (e.g., x, y, and z).
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readme.thrgibbs3.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1

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