Differences

This shows you the differences between two versions of the page.

--- application_programs [2012/05/15 09:33] – andres
+++ application_programs [2012/05/24 14:31] – shogo
@@ Line 1: / Line 1: @@
 The programs support mixed models with multiple-correlated effects, multiple animal models and dominance.
+FIXME Should we link all programs to their Readme's and doc's? (AL)
    * BLUPF90 - BLUP in memory {{blupf90.pdf}}
-   *REMLF90 - accelerated EM REML {{remlf90.pdf}}
+   * REMLF90 - accelerated EM REML {{remlf90.pdf}}
    * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http://www.icrea.cat/Web/OtherSectionViewer.aspx?key=485&titol=Software:Qxpak | QxPak web page]]
-  * AIREMLF90 - Average Information REML (S. Tsuruta)
+  * AIREMLF90 - Average Information REML with several options including heterogeneous residual variances (S. Tsuruta)
-  *  AIREMLRES - as above with support for heterogeneous residual variances (T. Druet)
+  * AIREMLRES - as above with support for heterogeneous residual variances (T. Druet)
-  * CBLUP90  - Solutions for bivariate linear-threshold models
+  * CBLUP90  - solutions for bivariate linear-threshold models
-  * CBLUP90THR  -as above but with thresholds computed and many linear traits (B. Auvray)
+  * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray)
-  *   CBLUP90REML - as above but with quasi REML (B. Auvray)
+  * CBLUP90REML - as above but with quasi REML (B. Auvray)
   * GIBBSF90 - simple block implementation of Gibbs sampling
-  * GIBBS1F90 - as above but faster because mixed model equations created only once
+  * GIBBS1F90 - as above but faster for creating mixed model equations only once
   * GIBBS2F90 - as above but with joint sampling of correlated effects
-  *  GIBBS3F90 - as above with support for heterogeneous residual variances
+  * GIBBS3F90 - as above with support for heterogeneous residual variances
-  *  POSTGIBBSF90 - graphical tool for post-Gibbs analysis (S. Tsuruta)
+  * POSTGIBBSF90 - statistics and graphics for post-Gibbs analysis (S. Tsuruta)
-  * THRGIBBSF90 - Gibbs -sampling for any combination of categorical and linear traits (D. Lee)
+  * THRGIBBSF90 - Gibbs sampling for any combination of categorical and linear traits (D. Lee)
-  * THRGIBBS1F90 – As above but simplified (S. Tsuruta)
+  * THRGIBBS1F90 – as above but simplified with several options (S. Tsuruta)
-  * RENUMF90 -  a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets
+  * RENUMF90 - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets