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--- application_programs [2012/05/28 14:28] – shogo
+++ application_programs [2012/09/03 13:11] – andres
@@ Line 1: / Line 1: @@
-The programs support mixed models with multiple-correlated effects, multiple animal models and dominance.
+The [[distribution|programs]] support mixed models with multiple-correlated effects, multiple animal models and dominance.
-FIXME Should we link all programs to their Readme's and doc's? (AL)
    * [[readme.blupf90|BLUPF90]] - BLUP in memory {{blupf90.pdf}}
    * [[readme.reml|REMLF90]] - accelerated EM REML {{remlf90.pdf}}
    * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http://www.icrea.cat/Web/OtherSectionViewer.aspx?key=485&titol=Software:Qxpak | QxPak web page]]
-  * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including heterogeneous residual variances (S. Tsuruta)
+  * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta)
   * AIREMLRES - as above with support for heterogeneous residual variances (T. Druet)
   * CBLUP90  - solutions for bivariate linear-threshold models
@@ Line 19: / Line 18: @@
   * [[readme.thrgibbs1|THRGIBBS1F90]] – as above but simplified with several options (S. Tsuruta)
   * [[Readme.Renumf90|RENUMF90]] - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets
+  * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar)
 Available by request
@@ Line 35: / Line 34: @@
 Included in application programs
   * [[readme.pregsf90|PREGSF90]] – genomic preprocessor that combines genomic and pedigree relationships (I. Aguilar)
+  * [[readme.pregsf90|POSTGSF90]] – genomic postprocessor that extracts SNP solutions after genomic evaluations (single step, GBLUP) (I. Aguilar)