application_programs
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| application_programs [2012/05/28 14:29] – shogo | application_programs [2013/06/12 11:42] – andres | ||
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| - | The programs support mixed models with multiple-correlated effects, multiple animal models and dominance. | + | The [[distribution|programs]] support mixed models with multiple-correlated effects, multiple animal models and dominance. |
| - | FIXME Should we link all programs to their Readme' | ||
| * [[readme.blupf90|BLUPF90]] - BLUP in memory {{blupf90.pdf}} | * [[readme.blupf90|BLUPF90]] - BLUP in memory {{blupf90.pdf}} | ||
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| * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | ||
| * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta) | * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta) | ||
| - | * AIREMLRES - as above with support for heterogeneous residual variances (T. Druet) | ||
| * CBLUP90 | * CBLUP90 | ||
| * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) | * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) | ||
| Line 19: | Line 17: | ||
| * [[readme.thrgibbs1|THRGIBBS1F90]] – as above but simplified with several options (S. Tsuruta) | * [[readme.thrgibbs1|THRGIBBS1F90]] – as above but simplified with several options (S. Tsuruta) | ||
| * [[Readme.Renumf90|RENUMF90]] - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets | * [[Readme.Renumf90|RENUMF90]] - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets | ||
| - | | + | |
| Available by request | Available by request | ||
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| * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with support for very large models (S. Tsuruta) | * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with support for very large models (S. Tsuruta) | ||
| * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models | * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models | ||
| - | * BLUP90IODTHR - as above for threshold-linear models | ||
| * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | ||
| * BLUP90ADJ - data preadjustment tool | * BLUP90ADJ - data preadjustment tool | ||
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| Included in application programs | Included in application programs | ||
| * [[readme.pregsf90|PREGSF90]] – genomic preprocessor that combines genomic and pedigree relationships (I. Aguilar) | * [[readme.pregsf90|PREGSF90]] – genomic preprocessor that combines genomic and pedigree relationships (I. Aguilar) | ||
| + | * [[readme.pregsf90|POSTGSF90]] – genomic postprocessor that extracts SNP solutions after genomic evaluations (single step, GBLUP) (I. Aguilar) | ||
| + | |||
| + | Other programming contributions were made by Miguel Perez-Enciso '' | ||
application_programs.txt · Last modified: 2024/06/19 14:22 by andres