Differences

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--- application_programs [2014/05/26 07:56] – ignacio
+++ application_programs [2016/05/05 13:10] – dani
@@ Line 1: / Line 1: @@
 The [[distribution|programs]] support mixed models with multiple-correlated effects, multiple animal models and dominance.
+Download {{:blupf90_ALL2.pdf|BLUPF90 manual}}
-   * [[readme.blupf90|BLUPF90]] - BLUP in memory {{blupf90.pdf}}
+   * [[readme.blupf90|BLUPF90]] - BLUP in memory
-   * [[readme.reml|REMLF90]] - accelerated EM REML {{remlf90.pdf}}
+   * [[readme.reml|REMLF90]] - accelerated EM REML
    * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http://www.icrea.cat/Web/OtherSectionViewer.aspx?key=485&titol=Software:Qxpak | QxPak web page]]
   * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta)
@@ Line 19: / Line 20: @@
   * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar)
   * [[Readme.SeekParentf90|SEEKPARENTF90]] -  a program to verify paternity and parent discovery using SNP markers (I. Aguilar)
+  * PREDICTF90 - a program to calculate adjusted y, y_hat, and residuals (I. Aguilar)
+  * PREDF90 – a program to predict direct genomic value (DGV) for animals based on genotypes and SNP solution
 Available by request
@@ Line 26: / Line 29: @@
 Available only under research agreement
-  * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with support for very large models (S. Tsuruta)
+  * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta)
   * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models
   * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values