application_programs
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| application_programs [2014/07/11 11:21] – shogo | application_programs [2016/05/12 14:12] – dani | ||
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| The [[distribution|programs]] support mixed models with multiple-correlated effects, multiple animal models and dominance. | The [[distribution|programs]] support mixed models with multiple-correlated effects, multiple animal models and dominance. | ||
| - | Download {{:blupf90_all1.pdf|BLUPF90 manual}} | + | Download {{:blupf90_all4.pdf|BLUPF90 manual}} |
| * [[readme.blupf90|BLUPF90]] - BLUP in memory | * [[readme.blupf90|BLUPF90]] - BLUP in memory | ||
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| * [[readme.postgibbs|POSTGIBBSF90]] - statistics and graphics for post-Gibbs analysis (S. Tsuruta) | * [[readme.postgibbs|POSTGIBBSF90]] - statistics and graphics for post-Gibbs analysis (S. Tsuruta) | ||
| * THRGIBBSF90 - Gibbs sampling for any combination of categorical and linear traits (D. Lee) | * THRGIBBSF90 - Gibbs sampling for any combination of categorical and linear traits (D. Lee) | ||
| - | * [[readme.thrgibbs1|THRGIBBS1F90]] | + | * [[readme.thrgibbs1|THRGIBBS1F90]] |
| * [[Readme.Renumf90|RENUMF90]] - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets | * [[Readme.Renumf90|RENUMF90]] - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets | ||
| * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) | * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) | ||
| * [[Readme.SeekParentf90|SEEKPARENTF90]] - a program to verify paternity and parent discovery using SNP markers (I. Aguilar) | * [[Readme.SeekParentf90|SEEKPARENTF90]] - a program to verify paternity and parent discovery using SNP markers (I. Aguilar) | ||
| + | * PREDICTF90 - a program to calculate adjusted y, y_hat, and residuals (I. Aguilar) | ||
| + | * PREDF90 - a program to predict direct genomic value (DGV) for animals based on genotypes and SNP solution | ||
| Available by request | Available by request | ||
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| Available only under research agreement | Available only under research agreement | ||
| - | * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with support | + | * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) |
| * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models | * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models | ||
| * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | ||
application_programs.txt · Last modified: 2024/06/19 14:22 by andres