Differences

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--- application_programs [2014/12/14 01:12] – shogo
+++ application_programs [2017/03/21 20:16] – shogo
@@ Line 1: / Line 1: @@
 The [[distribution|programs]] support mixed models with multiple-correlated effects, multiple animal models and dominance.
-Download {{:blupf90_all1.pdf|BLUPF90 manual}}
+**Most** of the programs now support being called with the parameter file as an argument, e.g. <file> blupf90 renf90.par </file>. This avoids typing the name of the file in interactive or doing the trick <file> echo renf90.par | blupf90 </file>.
+Download {{:blupf90_all5.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. ''inbupgf90'')
    * [[readme.blupf90|BLUPF90]] - BLUP in memory
@@ Line 14: / Line 16: @@
   * [[readme.gibbs2|GIBBS2F90]] - as above but with joint sampling of correlated effects
   * [[readme.gibbs3|GIBBS3F90]] - as above with support for heterogeneous residual variances
+  * [[readme.gibbscen|GIBBS2CENF90]] - support censored data (J. Arango)
+  * [[readme.gibbsrecur|GIBBS1RECURF90]] - support recursive models (J. P. Sanchez)
   * [[readme.postgibbs|POSTGIBBSF90]] - statistics and graphics for post-Gibbs analysis (S. Tsuruta)
   * THRGIBBSF90 - Gibbs sampling for any combination of categorical and linear traits (D. Lee)
-  * [[readme.thrgibbs1|THRGIBBS1F90]] – as above but simplified with several options (S. Tsuruta)
+  * [[readme.thrgibbs1|THRGIBBS1F90]] - as above but simplified with several options (S. Tsuruta)
   * [[Readme.Renumf90|RENUMF90]] - a renumbering program that also can check pedigrees and assign unknown parent groups; supports large data sets
   * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar)
   * [[Readme.SeekParentf90|SEEKPARENTF90]] -  a program to verify paternity and parent discovery using SNP markers (I. Aguilar)
+  * PREDICTF90 - a program to calculate adjusted y, y_hat, and residuals (I. Aguilar)
+  * PREDF90 - a program to predict direct genomic value (DGV) for animals based on genotypes and SNP solution
 Available by request