application_programs
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application_programs [2017/03/21 20:16] – shogo | application_programs [2018/03/06 21:10] – shogo | ||
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* QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | ||
* [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta) | * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta) | ||
- | * CBLUP90 | + | * CBLUP90 |
* CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) | * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) | ||
* CBLUP90REML - as above but with quasi REML (B. Auvray) | * CBLUP90REML - as above but with quasi REML (B. Auvray) | ||
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* [[readme.gibbs2|GIBBS2F90]] - as above but with joint sampling of correlated effects | * [[readme.gibbs2|GIBBS2F90]] - as above but with joint sampling of correlated effects | ||
* [[readme.gibbs3|GIBBS3F90]] - as above with support for heterogeneous residual variances | * [[readme.gibbs3|GIBBS3F90]] - as above with support for heterogeneous residual variances | ||
- | * [[readme.gibbscen|GIBBS2CENF90]] - support censored data (J. Arango) | + | * [[readme.gibbscen|GIBBS2CEN]] - support censored data (J. Arango) |
- | * [[readme.gibbsrecur|GIBBS1RECURF90]] - support recursive models (J. P. Sanchez) | + | * [[readme.gibbsrecur|GIBBS2RECUR]] - support recursive models (J. P. Sanchez) |
* [[readme.postgibbs|POSTGIBBSF90]] - statistics and graphics for post-Gibbs analysis (S. Tsuruta) | * [[readme.postgibbs|POSTGIBBSF90]] - statistics and graphics for post-Gibbs analysis (S. Tsuruta) | ||
* THRGIBBSF90 - Gibbs sampling for any combination of categorical and linear traits (D. Lee) | * THRGIBBSF90 - Gibbs sampling for any combination of categorical and linear traits (D. Lee) | ||
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Available only under research agreement | Available only under research agreement | ||
* [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) | * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) | ||
- | * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models | + | * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models |
* [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | ||
* BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations | * BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations |
application_programs.txt · Last modified: 2024/06/19 14:22 by andres