application_programs
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| application_programs [2018/03/23 17:23] – shogo | application_programs [2018/05/07 18:13] – dani | ||
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| **Most** of the programs now support being called with the parameter file as an argument, e.g. < | **Most** of the programs now support being called with the parameter file as an argument, e.g. < | ||
| - | Download {{:blupf90_all6.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. '' | + | Download {{:blupf90_all7.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. '' |
| * [[readme.blupf90|BLUPF90]] - BLUP in memory | * [[readme.blupf90|BLUPF90]] - BLUP in memory | ||
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| Available by request | Available by request | ||
| * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | ||
| - | * MRF90 - Method R program suitable for very large data sets; contact T. Druet. | + | * MRF90 - Method R program suitable for a large data set; contact T. Druet. |
| * COXF90 – Bayesian Cox model - contact J. P. Sanchez (JuanPablo.Sanchez@irta.cat) | * COXF90 – Bayesian Cox model - contact J. P. Sanchez (JuanPablo.Sanchez@irta.cat) | ||
| * BLUPF90HYP – BLUPF90 with hypothesis testing (F and Chi2 tests) - contact J. P. Sanchez as above | * BLUPF90HYP – BLUPF90 with hypothesis testing (F and Chi2 tests) - contact J. P. Sanchez as above | ||
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| * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations | * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations | ||
| * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | ||
| - | * BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations | + | * BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations |
| * [[readme.blupadj|BLUP90ADJ]] - BLUP data preadjustment tool | * [[readme.blupadj|BLUP90ADJ]] - BLUP data preadjustment tool | ||
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application_programs.txt · Last modified: 2024/06/19 14:22 by andres