application_programs
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application_programs [2018/04/09 23:27] – shogo | application_programs [2018/06/20 20:12] – shogo | ||
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**Most** of the programs now support being called with the parameter file as an argument, e.g. < | **Most** of the programs now support being called with the parameter file as an argument, e.g. < | ||
- | Download {{:blupf90_all6.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. '' | + | Download {{:blupf90_all7.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. '' |
* [[readme.blupf90|BLUPF90]] - BLUP in memory | * [[readme.blupf90|BLUPF90]] - BLUP in memory | ||
* [[readme.reml|REMLF90]] - accelerated EM REML | * [[readme.reml|REMLF90]] - accelerated EM REML | ||
* [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta) | * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta) | ||
- | * CBLUP90 | + | * CBLUP90 |
- | * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) | + | * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) |
* CBLUP90REML - as above but with quasi REML (B. Auvray) - no genomic | * CBLUP90REML - as above but with quasi REML (B. Auvray) - no genomic | ||
* GIBBSF90 - simple block implementation of Gibbs sampling - no genomic | * GIBBSF90 - simple block implementation of Gibbs sampling - no genomic | ||
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Available by request | Available by request | ||
* QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http:// | ||
- | * MRF90 - Method R program suitable for very large data sets; contact T. Druet. | + | * MRF90 - Method R program suitable for a large data set; contact T. Druet. |
* COXF90 – Bayesian Cox model - contact J. P. Sanchez (JuanPablo.Sanchez@irta.cat) | * COXF90 – Bayesian Cox model - contact J. P. Sanchez (JuanPablo.Sanchez@irta.cat) | ||
* BLUPF90HYP – BLUPF90 with hypothesis testing (F and Chi2 tests) - contact J. P. Sanchez as above | * BLUPF90HYP – BLUPF90 with hypothesis testing (F and Chi2 tests) - contact J. P. Sanchez as above |
application_programs.txt · Last modified: 2024/06/19 14:22 by andres