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application_programs [2018/04/09 23:51] shogoapplication_programs [2018/06/20 20:12] shogo
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 **Most** of the programs now support being called with the parameter file as an argument, e.g. <file> blupf90 renf90.par </file>. This avoids typing the name of the file in interactive or doing the trick <file> echo renf90.par | blupf90 </file>. **Most** of the programs now support being called with the parameter file as an argument, e.g. <file> blupf90 renf90.par </file>. This avoids typing the name of the file in interactive or doing the trick <file> echo renf90.par | blupf90 </file>.
  
-Download {{:blupf90_all6.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. ''inbupgf90'')+Download {{:blupf90_all7.pdf|BLUPF90 family manual}}. Note that some programs repertoried below are not in the manual (e.g. ''inbupgf90'')
  
    * [[readme.blupf90|BLUPF90]] - BLUP in memory    * [[readme.blupf90|BLUPF90]] - BLUP in memory
    * [[readme.reml|REMLF90]] - accelerated EM REML    * [[readme.reml|REMLF90]] - accelerated EM REML
    * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta)    * [[readme.aireml|AIREMLF90]] - Average Information REML with several options including EM-REML and heterogeneous residual variances (S. Tsuruta)
-  * CBLUP90  - solutions for bivariate linear-threshold models (works only for 2 trait model: threshold and linear) - no genomic +  * CBLUP90  - solutions for bivariate linear-threshold models (works only for 2 trait model: threshold and linear) 
-  * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray) - no genomic+  * CBLUP90THR - as above but with thresholds computed and many linear traits (B. Auvray)
   * CBLUP90REML - as above but with quasi REML (B. Auvray) - no genomic   * CBLUP90REML - as above but with quasi REML (B. Auvray) - no genomic
   * GIBBSF90 - simple block implementation of Gibbs sampling - no genomic   * GIBBSF90 - simple block implementation of Gibbs sampling - no genomic
application_programs.txt · Last modified: 2024/06/19 14:22 by andres

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