application_programs
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| application_programs [2022/05/04 00:35] – dani | application_programs [2022/05/05 21:56] – dani | ||
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| * PREDF90 - a program to predict direct genomic value (DGV) for animals based on genotypes and SNP solution | * PREDF90 - a program to predict direct genomic value (DGV) for animals based on genotypes and SNP solution | ||
| * [[readme.qcf90|QCF90]] - a quality-control tool on genotypes and pedigree information (Y. Masuda) | * [[readme.qcf90|QCF90]] - a quality-control tool on genotypes and pedigree information (Y. Masuda) | ||
| - | * [[readme.blupf90new|BLUPF90+ | + | * [[readme.blupf90new|BLUPF90+]] - a combined program of blupf90, remlf90, and airemlf90 |
| - | * [[readme.gibbsf90new|GIBBSF90+ | + | * [[readme.gibbsf90new|GIBBSF90+]] - a combined program of gibbs2f90, gibbs3f90, thrgibbs1f90, |
| Available by request | Available by request | ||
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| Available only under research agreement | Available only under research agreement | ||
| * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) | * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) | ||
| - | * BLUP90IOD2R | + | * BLUP90IOD2RR |
| - | * [[readme.thr1pcg|CBLUP90IOD]] - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) | + | * [[readme.thr1pcg|CBLUP90IOD2]] - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) |
| * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations | * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations | ||
| * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | ||
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| * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP) | * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP) | ||
| * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation | * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation | ||
| - | * [[readme.pcgtest|BLUP90IODTEST (new BLUP90IOD)]] - a combined program of BLUP90IOD2, | + | * [[readme.pcgtest|BLUP90IODTEST (new BLUP90IOD)]] - a combined program of BLUP90IOD2, |
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| Included in application programs | Included in application programs | ||
application_programs.txt · Last modified: 2024/06/19 14:22 by andres