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application_programs [2022/05/10 20:34] daniapplication_programs [2022/05/10 21:00] dani
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 Download {{:blupf90_all7.pdf|BLUPF90 family manual}}. Note that some programs shown below are not in the manual (e.g. ''inbupgf90'') Download {{:blupf90_all7.pdf|BLUPF90 family manual}}. Note that some programs shown below are not in the manual (e.g. ''inbupgf90'')
  
 +\\
 +**Main programs**
   * [[readme.blupf90plus|BLUPF90+]] - a combined program of blupf90, remlf90, and airemlf90   * [[readme.blupf90plus|BLUPF90+]] - a combined program of blupf90, remlf90, and airemlf90
   * [[readme.gibbsf90plus|GIBBSF90+]] - a combined program of gibbs1f90, gibbs2f90, gibbs3f90, thrgibbs1f90, and thrgibbs3f90   * [[readme.gibbsf90plus|GIBBSF90+]] - a combined program of gibbs1f90, gibbs2f90, gibbs3f90, thrgibbs1f90, and thrgibbs3f90
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 /*Included in application programs*/ /*Included in application programs*/
  
- +**Available by request**
-Available by request+
   * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http://www.icrea.cat/Web/OtherSectionViewer.aspx?key=485&titol=Software:Qxpak | QxPak web page]]   * QXPAK - joint analysis of QTL and polygenic effects (M. Perez-Enciso) [[http://www.icrea.cat/Web/OtherSectionViewer.aspx?key=485&titol=Software:Qxpak | QxPak web page]]
   * MRF90 - Method R program suitable for a large data set; contact T. Druet.   * MRF90 - Method R program suitable for a large data set; contact T. Druet.
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   * BLUPF90HYP – BLUPF90 with hypothesis testing (F and Chi2 tests) - contact J. P. Sanchez as above   * BLUPF90HYP – BLUPF90 with hypothesis testing (F and Chi2 tests) - contact J. P. Sanchez as above
      
-Available only under research agreement+**Available only under research agreement**
   * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta)   * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta)
   * BLUP90IOD2RR & BLUP90IOD2HR - BLUP90IOD2 with heterogeneous residual variances (like in GIBBS3F90 & AIREMLF90)   * BLUP90IOD2RR & BLUP90IOD2HR - BLUP90IOD2 with heterogeneous residual variances (like in GIBBS3F90 & AIREMLF90)
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   * [[readme.pcgtest|BLUP90IODTEST (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, and BLUP90IOD2HR: under test   * [[readme.pcgtest|BLUP90IODTEST (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, and BLUP90IOD2HR: under test
      
-Deprecated programs (as of May 2022)+**Deprecated programs (as of May 2022)**
   * [[readme.blupf90|BLUPF90]] - BLUP in memory   * [[readme.blupf90|BLUPF90]] - BLUP in memory
   * [[readme.reml|REMLF90]] - accelerated EM REML   * [[readme.reml|REMLF90]] - accelerated EM REML
application_programs.txt · Last modified: 2024/06/19 14:22 by andres

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