Differences

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--- application_programs [2022/05/10 21:45] – dani
+++ application_programs [2023/08/24 22:27] – andres
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 Download {{:blupf90_all8.pdf|BLUPF90 family manual}}. Note that some programs shown below are not in the manual (e.g. ''inbupgf90'')
+\\
+:!: How to cite the BLUPF90 manual:
+Misztal I., Tsuruta S., Lourenco D.A.L., Aguilar I., Legarra A., and Vitezica Z. 2014. Manual for BLUPF90 family of programs.
 \\
 ===== Programs =====
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   * [[readme.pregsf90|PREGSF90]] – genomic preprocessor that combines genomic and pedigree relationships (I. Aguilar)
   * [[readme.pregsf90|POSTGSF90]] – genomic postprocessor that extracts SNP solutions after genomic evaluations (single step, GBLUP) (I. Aguilar)
-  * [[Readme.pedictf90|PREDICTF90]] - a program to calculate adjusted y, y_hat, and residuals (I. Aguilar)
+  * [[Readme.predictf90|PREDICTF90]] - a program to calculate adjusted y, y_hat, and residuals (I. Aguilar)
   * [[Readme.predf90|PREDF90]] - a program to predict direct genomic value (DGV) for animals based on genotypes and SNP solution
   * [[readme.qcf90|QCF90]] - a quality-control tool on genotypes and pedigree information (Y. Masuda)
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   * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values
   * [[readme.accgs|ACCF90GS]] - approximation of accuracies for genomic breeding values
+  * [[readme.accgs2|ACCF90GS2]] - new approximation of accuracies for genomic breeding values
   * BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations (A. Legarra)
   * [[readme.blupadj|BLUP90ADJ]] - BLUP data preadjustment tool
   * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP)
   * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation
-  * [[readme.pcgtest|BLUP90IODTEST (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, and BLUP90IOD2HR: under test
+  * [[readme.pcgtest|BLUP90IOD3 (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, and BLUP90IOD2HR with new features
 **No longer updated (as of May 2022)**