Differences

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--- application_programs [2022/05/10 21:48] – dani
+++ application_programs [2023/11/21 22:49] – shogo
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 Download {{:blupf90_all8.pdf|BLUPF90 family manual}}. Note that some programs shown below are not in the manual (e.g. ''inbupgf90'')
+\\
+:!: How to cite the BLUPF90 manual:
+Misztal I., Tsuruta S., Lourenco D.A.L., Aguilar I., Legarra A., and Vitezica Z. 2014. Manual for BLUPF90 family of programs.
 \\
 ===== Programs =====
-**Available for research (free)**
+**Available for research (free with restriction)**
   * [[readme.blupf90plus|BLUPF90+]] - a combined program of blupf90, remlf90, and airemlf90
   * [[readme.gibbsf90plus|GIBBSF90+]] - a combined program of gibbs1f90, gibbs2f90, gibbs3f90, thrgibbs1f90, and thrgibbs3f90
@@ Line 30: / Line 35: @@
 **Available only under research agreement**
   * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta)
-  * BLUP90IOD2RR & BLUP90IOD2HR - BLUP90IOD2 with heterogeneous residual variances (like in GIBBS3F90 & AIREMLF90)
   * [[readme.thr1pcg|CBLUP90IOD2]] - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits)
   * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations
   * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values
   * [[readme.accgs|ACCF90GS]] - approximation of accuracies for genomic breeding values
-  * BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations (A. Legarra)
+  * [[readme.accgs2|ACCF90GS2]] - new approximation of accuracies for genomic breeding values
   * [[readme.blupadj|BLUP90ADJ]] - BLUP data preadjustment tool
   * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP)
   * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation
-  * [[readme.pcgtest|BLUP90IODTEST (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, and BLUP90IOD2HR: under test
+  * [[readme.pcgtest|BLUP90IOD3 (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR,  BLUP90IOD2HR, and BLUP90MBE2 with new features
 **No longer updated (as of May 2022)**
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   * [[readme.gibbscen|GIBBS2CEN]] - support censored data (J. Arango) - no genomic
   * [[readme.gibbsrecur|GIBBS2RECUR]] - support recursive models (J. P. Sanchez) - no genomic
+  * BLUP90IOD2RR & BLUP90IOD2HR - BLUP90IOD2 with heterogeneous residual variances (like in GIBBS3F90 & AIREMLF90)
+  * BLUP90MBE - BLUP by iteration on data with support for very large models for multi-breed evaluations (A. Legarra)
 Other programming contributions were made by Miguel Perez-Enciso ''(user_file)'' and François Guillaume (Jenkins hashing functions).