application_programs
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| application_programs [2023/09/04 20:56] – [Programs] shogo | application_programs [2024/04/17 17:18] – andres | ||
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| - | :!: How to cite the BLUPF90 manual: | + | How to cite the BLUPF90 manual: |
| Misztal I., Tsuruta S., Lourenco D.A.L., Aguilar I., Legarra A., and Vitezica Z. 2014. Manual for BLUPF90 family of programs. | Misztal I., Tsuruta S., Lourenco D.A.L., Aguilar I., Legarra A., and Vitezica Z. 2014. Manual for BLUPF90 family of programs. | ||
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| ===== Programs ===== | ===== Programs ===== | ||
| - | **Available for research (free)** | + | **Available for research (free with restriction: |
| * [[readme.blupf90plus|BLUPF90+]] - a combined program of blupf90, remlf90, and airemlf90 | * [[readme.blupf90plus|BLUPF90+]] - a combined program of blupf90, remlf90, and airemlf90 | ||
| * [[readme.gibbsf90plus|GIBBSF90+]] - a combined program of gibbs1f90, gibbs2f90, gibbs3f90, thrgibbs1f90, | * [[readme.gibbsf90plus|GIBBSF90+]] - a combined program of gibbs1f90, gibbs2f90, gibbs3f90, thrgibbs1f90, | ||
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| * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) | * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) | ||
| * [[Readme.SeekParentf90|SEEKPARENTF90]] - a program to verify paternity and parent discovery using SNP markers (I. Aguilar) | * [[Readme.SeekParentf90|SEEKPARENTF90]] - a program to verify paternity and parent discovery using SNP markers (I. Aguilar) | ||
| + | * [[Readme.validationf90|VALIDATIONF90]] - a program to perform forward validation of predictions (coming soon!) | ||
| /*Included in application programs*/ | /*Included in application programs*/ | ||
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| * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP) | * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP) | ||
| * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation | * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation | ||
| - | * [[readme.pcgtest|BLUP90IOD3 (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, | + | * [[readme.pcgtest|BLUP90IOD3 (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, |
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| **No longer updated (as of May 2022)** | **No longer updated (as of May 2022)** | ||
application_programs.txt · Last modified: 2024/06/19 14:22 by andres