application_programs
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| application_programs [2024/04/17 19:03] – andres | application_programs [2024/05/17 20:11] – [Programs] dani | ||
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| **Most** of the programs now support being called with the parameter file as an argument, e.g. < | **Most** of the programs now support being called with the parameter file as an argument, e.g. < | ||
| - | Download {{:blupf90_all8.pdf|BLUPF90 family manual}}. Note that some programs shown below are not in the manual (e.g. '' | + | Download {{:blupf90_ALL.pdf|BLUPF90 family manual}}. Note that some programs shown below are not in the manual (e.g. '' |
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| * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) | * [[Readme.Inbupgf90|INBUPGF90]] - a program to calculate inbreeding coefficients with incomplete pedigree (I. Aguilar) | ||
| * [[Readme.SeekParentf90|SEEKPARENTF90]] - a program to verify paternity and parent discovery using SNP markers (I. Aguilar) | * [[Readme.SeekParentf90|SEEKPARENTF90]] - a program to verify paternity and parent discovery using SNP markers (I. Aguilar) | ||
| - | * [[Readme.validationf90|VALIDATIONF90]] - a program to perform validation of predictions (coming soon!) | + | * [[Readme.validationf90|VALIDATIONF90]] - a program to perform validation of predictions (M. Bermann; |
| /*Included in application programs*/ | /*Included in application programs*/ | ||
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| **Available only under research agreement** | **Available only under research agreement** | ||
| * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) | * [[readme.pcg2|BLUP90IOD2]] - BLUP by iteration on data with PCG for very large models (S. Tsuruta) | ||
| + | * [[readme.pcgtest|BLUP90IOD3 (new BLUP90IOD)]] - a combined program of BLUP90IOD2, BLUP90IOD2RR, | ||
| * [[readme.thr1pcg|CBLUP90IOD2]] - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) | * [[readme.thr1pcg|CBLUP90IOD2]] - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) | ||
| * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations | * CBLUP90MBE - BLUP by iteration on data for threshold-linear models (working for one threshold and several linear traits) with support for very large models for multi-breed evaluations | ||
| * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | * [[readme.acc|ACCF90]] - approximation of accuracies for breeding values | ||
| - | * [[readme.accgs|ACCF90GS]] - approximation of accuracies for genomic breeding values | + | * [[readme.accgs|ACCF90GS]] - approximation of accuracies for genomic breeding values |
| - | * [[readme.accgs2|ACCF90GS2]] - new approximation of accuracies for genomic breeding values | + | * [[readme.accgs2|ACCF90GS2]] - new approximation of accuracies for genomic breeding values |
| * [[readme.blupadj|BLUP90ADJ]] - BLUP data preadjustment tool | * [[readme.blupadj|BLUP90ADJ]] - BLUP data preadjustment tool | ||
| * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP) | * [[readme.deproofs|DEPROOFSF90]] - computation of deregressed proof (DRP) | ||
| * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation | * [[readme.dyd|DYDF90]] - computation of daughter yield deviation (DYD) known as progeny trait deviation | ||
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| **No longer updated (as of May 2022)** | **No longer updated (as of May 2022)** | ||
application_programs.txt · Last modified: 2024/06/19 14:22 by andres