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covariance_structure_of_correlated_random_effects_for_multiple_traits

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covariance_structure_of_correlated_random_effects_for_multiple_traits [2018/03/29 18:40] – created andrescovariance_structure_of_correlated_random_effects_for_multiple_traits [2018/03/29 18:44] andres
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 For instance terminal crosses models (e.g. [[https://gsejournal.biomedcentral.com/articles/10.1186/s12711-016-0211-3||here]]) use: For instance terminal crosses models (e.g. [[https://gsejournal.biomedcentral.com/articles/10.1186/s12711-016-0211-3||here]]) use:
  
-  * trait_pure: animal  +  * trait_pure: y = u + e (animal 
-  * trait_crossbred : sire(crossbred)+  * trait_crossbred : y = s + e (sire of crossbred)
  
 Imagine that we have two such traits. Data file has "animal" in column 4 and "sire" in column 5.  Imagine that we have two such traits. Data file has "animal" in column 4 and "sire" in column 5. 
  
 +<file>
 ... ...
 4 0  3084 cross 4 0  3084 cross
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 ../SNPgr/ped.txt ../SNPgr/ped.txt
 (CO)VARIANCES (CO)VARIANCES
 +10 0 0 5
 +0 0 0 0
 +5 0 0 12
 +</file>
 +
 +Where we have a 4x4 matrix for covariances. In fact 
 +
  Effect 4 Effect 5  Effect 4 Effect 5
  Trait 1 Trait2 Trait1 Trait2  Trait 1 Trait2 Trait1 Trait2
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 Effect 5 Trait 1 0 0 0 0 Effect 5 Trait 1 0 0 0 0
  Trait2 Cov(s,u) Var(s)  Trait2 Cov(s,u) Var(s)
- 
- 
- 
covariance_structure_of_correlated_random_effects_for_multiple_traits.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1

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