faq
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faq [2012/05/10 19:48] – created ignacy | faq [2012/05/15 14:31] – shogo | ||
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- | FAQ for BLUPF90 programs | + | ====== |
- | Input files | + | |
- | data | + | ==== Input files ==== |
- | pedigree | + | |
- | Data preparation program | ||
- | renumf90 (ver 1.92) read me | + | * [[http:// |
- | | + | * [[http:// |
- | Frequent mistakes in a parameter file for BLUPF90 programs | + | ==== Data preparation program ==== |
- | parameter files for various models | + | * [[http:// |
- | | + | |
- | REML | + | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== |
- | remlf90 (ver 1.76) read me: EM algorithm - PDF | + | * parameter files for various models |
- | airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF) | + | * examples |
- | Gibbs sampling | + | === REML === |
+ | |||
+ | * remlf90 (ver 1.76) read me: EM algorithm - PDF | ||
+ | * airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF) | ||
+ | |||
+ | === Gibbs sampling | ||
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | ||
- | gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | + | |
- | gibbs2f90 (ver 1.76) read me | + | |
- | gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | |
- | thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model | + | |
- | Post-Gibbs Analysis | + | === Post-Gibbs Analysis |
postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | ||
- | BLUP | + | === BLUP === |
blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF |
faq.txt · Last modified: 2024/05/17 18:17 by dani