faq
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faq [2012/05/10 19:48] – created ignacy | faq [2012/05/16 14:30] – shogo | ||
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- | FAQ for BLUPF90 programs | + | ====== |
- | Input files | + | |
- | data | + | ==== Input files ==== |
- | pedigree | + | |
- | Data preparation program | ||
- | | + | |
- | | + | |
- | Frequent mistakes in a parameter file for BLUPF90 programs | + | ==== Data preparation program ==== |
- | | + | |
- | examples | + | |
- | REML | + | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== |
- | | + | |
- | | + | |
- | Gibbs sampling | + | ==== REML ==== |
+ | |||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | |||
+ | ==== Gibbs sampling | ||
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | ||
- | gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | + | |
- | gibbs2f90 (ver 1.76) read me | + | |
- | gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | |
- | thrgibbs1f90(b) (ver 2.100) | + | |
- | Post-Gibbs Analysis | + | ==== Post-Gibbs Analysis |
- | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | + | |
- | BLUP | + | ==== BLUP ==== |
- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | + | |
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | + | |
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | + | |
- | Accuracy | + | ==== Accuracy |
accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | ||
- | Genomic Analysis | + | ==== Genomic Analysis |
preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani