faq
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faq [2012/05/10 19:48] – created ignacy | faq [2012/05/28 14:31] – ignacio | ||
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- | FAQ for BLUPF90 programs | + | ====== |
- | Input files | + | |
- | data | + | ==== Input files ==== |
- | pedigree | + | |
- | Data preparation program | ||
- | | + | |
- | | + | |
- | Frequent mistakes in a parameter file for BLUPF90 programs | + | ==== Data preparation program ==== |
- | | + | |
- | examples | + | |
- | REML | + | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== |
- | | + | |
- | | + | |
- | Gibbs sampling | + | ==== REML ==== |
+ | |||
+ | * [[readme.reml|remlf90]]: | ||
+ | * [[http:// | ||
+ | * [[readme.aireml|airemlf90]]: | ||
+ | * [[http:// | ||
+ | |||
+ | ==== Gibbs sampler ==== | ||
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | ||
- | gibbs1f90 | + | |
- | | + | |
- | | + | |
- | | + | * [[http:// |
+ | * [[readme.gibbs3|gibbs3f90]]: Heterogeneous residual variances | ||
+ | | ||
+ | * [[readme.thrgibbs1|thrgibbs1f90]]: Threshold model + linear model | ||
+ | * [[http:// | ||
+ | |||
+ | ==== Post-Gibbs Analysis ==== | ||
- | Post-Gibbs | + | * [[readme.postgibbs|postgibbsf90]]: |
+ | * [[http:// | ||
- | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | + | ==== BLUP ==== |
- | BLUP | + | * [[readme.blupf90|blupf90]]: |
+ | * [[http:// | ||
+ | * [[readme.pcg2|blup90iod2]]: | ||
+ | * [[http:// | ||
+ | * [[readme.thr1pcg|cblup90iod]]: | ||
+ | * [[http:// | ||
- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | + | ==== Accuracy ==== |
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | + | |
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | + | |
- | Accuracy | + | * [[readme.acc|accf90]]: |
+ | * [[http:// | ||
- | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | + | ==== Genomic Analysis ==== |
- | Genomic Analysis | + | * [[readme.pregsf90|PreGSF90]]: |
- | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani