faq
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faq [2012/05/10 19:48] – created ignacy | faq [2016/03/22 20:14] – yutaka | ||
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- | FAQ for BLUPF90 programs | + | ====== |
- | Input files | + | |
- | data | + | Download {{: |
- | pedigree | + | |
- | Data preparation program | + | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== |
- | | + | |
- | examples | + | |
+ | * [[[[FAQ.parameter|parameter]] | ||
+ | * [[[[FAQ.example|examples]] | ||
- | Frequent mistakes in a parameter file for BLUPF90 programs | + | ==== Data preparation program ==== |
- | | + | |
- | examples | + | |
- | REML | + | ==== REML ==== |
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- | | + | |
- | Gibbs sampling | + | ==== Gibbs sampler ==== |
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) |
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+ | * [[readme.thrgibbs3|thrgibbs3f90]]: | ||
- | Post-Gibbs Analysis | + | ==== Post-Gibbs Analysis |
- | | + | |
- | BLUP | + | ==== BLUP ==== |
- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | + | |
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | + | |
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+ | * [[readme.pcg2hr|blup90iod2hr]]: | ||
+ | * [[readme.thr1pcg|cblup90iod2]]: BLUP with threshold | ||
- | Accuracy | + | ==== Accuracy |
- | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | + | |
+ | * [[readme.accgs|accf90GS]]: Accuracy (reliability) for a large number of animals | ||
- | Genomic Analysis | + | ==== Genomic Analysis |
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+ | |||
+ | ==== Technical problems in Windows / Linux ==== | ||
+ | |||
+ | * [[FAQ.windows|System Error]]: Received a message like "The program can't start because libiomp5md.dll is missing..." | ||
+ | * [[FAQ.segfault|Segmentation Fault]]: Received a message with " | ||
+ | * [[FAQ.openmp|Better settings for OpenMP]]: How should I define the number of threads used with a program? |
faq.txt · Last modified: 2024/05/17 18:17 by dani