faq
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faq [2012/05/15 07:41] – andres | faq [2014/05/28 12:30] – shogo | ||
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- | ====== | + | ====== |
- | ==== Input files ==== | + | Download {{: |
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | ||
- | | + | |
- | * pedigree | + | * [[[[FAQ.pedigree|pedigree]] |
+ | * [[[[FAQ.parameter|parameter]] | ||
+ | * [[[[FAQ.example|examples]] | ||
==== Data preparation program ==== | ==== Data preparation program ==== | ||
- | | + | |
- | examples | + | |
- | ==== Frequent mistakes in a parameter file for BLUPF90 programs | + | ==== REML ==== |
- | | + | |
- | | + | |
- | REML | + | ==== Gibbs sampler ==== |
+ | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | ||
- | | + | |
- | | + | |
+ | * [[readme.gibbs3|gibbs3f90]]: | ||
+ | * [[readme.thrgibbs1|thrgibbs1f90]]: | ||
+ | * [[readme.thrgibbs3|thrgibbs3f90]]: | ||
- | Gibbs sampling | + | ==== Post-Gibbs Analysis ==== |
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | |
- | | + | |
- | gibbs2f90 | + | |
- | gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | |
- | thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model | + | |
- | Post-Gibbs Analysis | + | ==== BLUP ==== |
- | | + | |
+ | * [[readme.pcg2|blup90iod2]]: | ||
+ | * [[readme.thr1pcg|cblup90iod]]: | ||
- | BLUP | + | ==== Accuracy ==== |
- | | + | |
- | blup90iod2 | + | |
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations | + | |
- | Accuracy | + | ==== Genomic Analysis ==== |
- | | + | |
- | Genomic Analysis | ||
- | |||
- | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani