faq
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faq [2012/05/15 14:30] – shogo | faq [2012/05/16 14:26] – shogo | ||
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- | * [[http:// | + | * [[http:// |
==== Data preparation program ==== | ==== Data preparation program ==== | ||
- | * renumf90 (ver 1.92) read me | + | |
- | | + | * [[http:// |
==== Frequent mistakes in a parameter file for BLUPF90 programs ==== | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== | ||
- | * parameter files for various models | + | |
- | | + | * [[http:// |
- | === REML === | + | ==== REML ==== |
- | * remlf90 (ver 1.76) read me: EM algorithm | + | * [[http:// |
- | * airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF) | + | * [[http:// |
- | === Gibbs sampling === | + | ==== Gibbs sampling |
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | ||
- | * gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | + | * [[http:// |
- | * gibbs2f90 (ver 1.76) read me | + | * [[http:// |
- | * gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | * [[http:// |
- | * thrgibbs1f90(b) (ver 2.100) | + | * [[http:// |
- | === Post-Gibbs Analysis === | + | ==== Post-Gibbs Analysis |
postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | ||
- | === BLUP === | + | ==== BLUP ==== |
blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | ||
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cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | ||
- | Accuracy | + | ==== Accuracy |
accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | ||
- | Genomic Analysis | + | ==== Genomic Analysis |
preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani