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faq [2012/05/15 14:34] – shogofaq [2012/05/28 14:22] – [Data preparation program] ignacio
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-      * [[http://nce.ads.uga.edu/html/projects/FAQ_data.html|data]] +    * [[http://nce.ads.uga.edu/html/projects/FAQ_data.html|data]] 
-      * [[http://nce.ads.uga.edu/html/projects/FAQ_pedigree.html|pedigree]]+    * [[http://nce.ads.uga.edu/html/projects/FAQ_pedigree.html|pedigree]]
  
 ==== Data preparation program ==== ==== Data preparation program ====
  
-   * [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.92)]] +    * [[[[readme.renumf90|renumf90 (ver 1.98)]] 
-   * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] +    * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] 
  
 ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== ==== Frequent mistakes in a parameter file for BLUPF90 programs ====
  
-   * parameter files for various models +    * [[http://nce.ads.uga.edu/html/projects/FAQ_param.html|parameter files for various models]] 
-   * examples +    * [[http://nce.ads.uga.edu/html/projects/FAQ_parameter.html|examples]] 
  
-=== REML ===+==== REML ====
  
-    * remlf90 (ver 1.76) read me: EM algorithm - PDF +    * [[readme.reml|remlf90]]: EM algorithm 
-    * airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF) +    * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]] 
 +    * [[readme.aireml|airemlf90]]: Average Information REML + REMLF90 
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_aireml.html|airemlf90 (ver 1.101)]] - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] 
  
-=== Gibbs sampling ===+==== Gibbs sampler ====
 OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances
  
-    * gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits +    * [[readme.gibbs1|gibbs1f90]]: Faster than GIBBS2F90 without missing traits 
-    * gibbs2f90 (ver 1.76) read me +    * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs1.html|gibbs1f90 (ver 1.43)]] 
-    * gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances +    * [[readme.gibbs2|gibbs2f90]]: 
-    * thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model +    * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs2.html|gibbs2f90 (ver 1.81)]] 
 +    * [[readme.gibbs3|gibbs3f90]]: Heterogeneous residual variances 
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs3.html|gibbs3f90 (ver 1.79)]] 
 +    * [[readme.thrgibbs1|thrgibbs1f90]]: Threshold model + linear model 
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_thrgibbs1.html|thrgibbs1f90(b) (ver 2.102)]] 
  
-=== Post-Gibbs Analysis ===+==== Post-Gibbs Analysis ====
  
-    postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) +    * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs)  
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_postgibbs.html|postgibbsf90 (ver 3.04)]] 
  
-=== BLUP ===+==== BLUP ====
  
-    blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF +    * [[readme.blupf90|blupf90]]: BLUP with SOR, FSPAK or PCG  
-    blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) +    * [[http://nce.ads.uga.edu/html/projects/FAQ_blup.html|blupf90 (ver 1.45)]] 
-    cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) +    * [[readme.pcg2|blup90iod2]]: BLUP for a large number of equations (available only under some conditions)  
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_pcg2.html|blup90iod2 (ver 3.81)]] 
 +    * [[readme.thr1pcg|cblup90iod]]: BLUP with threshold model + linear model for a large number of equations (available only under some conditions)  
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_cblup90iod2.html|cblup90iod2 (ver 3.17)]] 
  
-Accuracy+==== Accuracy ====
  
-    accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) +    * [[readme.acc|accf90]]: Accuracy (reliability) for a large number of animals (available only under some conditions)  
 +    * [[http://nce.ads.uga.edu/html/projects/FAQ_acc.html|accf90 (ver 1.66)]] 
  
-Genomic Analysis+==== Genomic Analysis ==== 
 + 
 +    * [[readme.pregsf90|PreGSF90]]: Pre-analysis of genomic programs 
  
-    preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs  
faq.txt · Last modified: 2024/05/17 18:17 by dani
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