faq
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
faq [2012/05/16 14:18] – shogo | faq [2016/04/01 18:12] – [Technical problems in Windows / Linux] yutaka | ||
---|---|---|---|
Line 1: | Line 1: | ||
- | ====== | + | ====== |
- | ==== Input files ==== | + | Download {{: |
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | ||
- | | + | |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.pedigree|pedigree]] |
+ | * [[[[FAQ.parameter|parameter]] | ||
+ | * [[[[FAQ.example|examples]] | ||
==== Data preparation program ==== | ==== Data preparation program ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | |
- | | + | * [[[[FAQ.renum_example|examples]] |
- | ==== Frequent mistakes in a parameter file for BLUPF90 programs | + | ==== REML ==== |
- | * [[http://nce.ads.uga.edu/ | + | |
- | | + | * [[readme.aireml|airemlf90]]: |
- | === REML === | + | ==== Gibbs sampler |
+ | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances | ||
- | * [[http:// | + | * [[readme.gibbs1|gibbs1f90]]: |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.gibbs2|gibbs2f90]]: Useful with missing traits |
+ | * [[readme.gibbs3|gibbs3f90]]: With heterogeneous residual variances | ||
+ | * [[readme.thrgibbs1|thrgibbs1f90]]: | ||
+ | * [[readme.thrgibbs3|thrgibbs3f90]]: Threshold | ||
- | === Gibbs sampling | + | ==== Post-Gibbs Analysis ==== |
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | |
- | * gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | + | * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for convergence diagnosis and post-Gibbs analysis |
- | * gibbs2f90 | + | |
- | * gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | + | |
- | * thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model | + | |
- | === Post-Gibbs Analysis | + | ==== BLUP ==== |
- | | + | |
+ | * [[readme.pcg2|blup90iod2]]: | ||
+ | * [[readme.pcg2r|blup90iod2r]]: (G)BLUP with GIBBS3F90-type heterogeneous residual variance | ||
+ | * [[readme.pcg2hr|blup90iod2hr]]: | ||
+ | * [[readme.thr1pcg|cblup90iod2]]: | ||
- | === BLUP === | + | ==== Accuracy (approximation) ==== |
- | | + | |
- | blup90iod2 | + | |
- | | + | |
- | Accuracy | + | ==== Genomic Analysis ==== |
- | | + | |
- | Genomic Analysis | + | ==== Technical problems in Windows / Linux ==== |
- | | + | |
+ | * [[FAQ.segfault|Segmentation Fault]]: Received a message with " | ||
+ | * [[FAQ.openmp|Better settings for OpenMP]]: How should I define the number |
faq.txt · Last modified: 2024/05/17 18:17 by dani