faq
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faq [2012/05/16 14:24] – shogo | faq [2012/05/30 13:35] – shogo | ||
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- | ==== Input files ==== | + | ==== Frequent mistakes in data, pedigree, and parameter |
- | + | * [[[[FAQ.data|data]] | |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.pedigree|pedigree]] |
- | * [[http:// | + | * [[[[FAQ.parameter|parameter]] |
+ | * [[[[FAQ.example|examples]] | ||
==== Data preparation program ==== | ==== Data preparation program ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[[[readme.renumf90|renumf90]] |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.renum_example|examples]] |
- | + | ||
- | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== | + | |
- | * [[http:// | + | ==== REML ==== |
- | * [[http:// | + | |
- | === REML === | + | * [[readme.reml|remlf90]]: |
+ | * [[readme.aireml|airemlf90]]: | ||
- | * [[http:// | + | ==== Gibbs sampler ==== |
- | * [[http:// | + | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) variances |
- | === Gibbs sampling === | + | * [[readme.gibbs1|gibbs1f90]]: |
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | * [[readme.gibbs2|gibbs2f90]]: |
+ | * [[readme.gibbs3|gibbs3f90]]: | ||
+ | * [[readme.thrgibbs1|thrgibbs1f90]]: | ||
- | * [[http:// | + | ==== Post-Gibbs Analysis ==== |
- | * [[http:// | + | |
- | * [[http:// | + | |
- | * [[http:// | + | |
- | === Post-Gibbs | + | * [[readme.postgibbs|postgibbsf90]]: |
- | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | + | ==== BLUP ==== |
- | === BLUP === | + | * [[readme.blupf90|blupf90]]: |
+ | * [[readme.pcg2|blup90iod2]]: | ||
+ | * [[readme.thr1pcg|cblup90iod]]: | ||
- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | + | ==== Accuracy ==== |
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | + | |
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | + | |
- | Accuracy | + | * [[readme.acc|accf90]]: |
- | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | + | ==== Genomic Analysis ==== |
- | Genomic Analysis | + | * [[readme.pregsf90|PreGSF90]]: |
- | preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani