| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision |
| faq [2012/05/16 14:26] – shogo | faq [2012/05/28 14:00] – shogo |
|---|
| ==== Data preparation program ==== | ==== Data preparation program ==== |
| |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.92)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.98)]] |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] |
| |
| ==== REML ==== | ==== REML ==== |
| |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]]: EM algorithm | * [[readme.reml|remlf90]]: EM algorithm |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|airemlf90 (ver 1.99)]]: Average Information REML + REMLF90 - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]] |
| | * [[readme.aireml|airemlf90]]: Average Information REML + REMLF90 |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_aireml.html|airemlf90 (ver 1.101)]] - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] |
| |
| ==== Gibbs sampling ==== | ==== Gibbs sampling ==== |
| OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances |
| |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs1.html|gibbs1f90 (ver 1.42)]]: Faster than GIBBS2F90 without missing traits | * [[readme.gibbs1|gibbs1f90]]: Faster than GIBBS2F90 without missing traits |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs2.html|gibbs2f90 (ver 1.76)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs1.html|gibbs1f90 (ver 1.43)]] |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs3.html|gibbs3f90 (ver 1.77)]]: Heterogeneous residual variances | * [[readme.gibbs2|gibbs2f90]]: |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs1.html|thrgibbs1f90(b) (ver 2.100)]]: Threshold model + linear model | * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs2.html|gibbs2f90 (ver 1.81)]] |
| | * [[readme.gibbs3|gibbs3f90]]: Heterogeneous residual variances |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs3.html|gibbs3f90 (ver 1.79)]] |
| | * [[readme.thrgibbs1|thrgibbs1f90]]: Threshold model + linear model |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_thrgibbs1.html|thrgibbs1f90(b) (ver 2.102)]] |
| |
| ==== Post-Gibbs Analysis ==== | ==== Post-Gibbs Analysis ==== |
| |
| postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs) |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_postgibbs.html|postgibbsf90 (ver 3.04)]] |
| |
| ==== BLUP ==== | ==== BLUP ==== |
| |
| blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | * [[readme.blupf90|blupf90]]: BLUP with SOR, FSPAK or PCG |
| blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | * [[http://nce.ads.uga.edu/html/projects/FAQ_blup.html|blupf90 (ver 1.45)]] |
| cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | * [[readme.pcg2|blup90iod2]]: BLUP for a large number of equations (available only under some conditions) |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_pcg2.html|blup90iod2 (ver 3.81)]] |
| | * [[readme.thr1pcg|cblup90iod]]: BLUP with threshold model + linear model for a large number of equations (available only under some conditions) |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_cblup90iod2.html|cblup90iod2 (ver 3.17)]] |
| |
| ==== Accuracy ==== | ==== Accuracy ==== |
| |
| accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | * [[readme.acc|accf90]]: Accuracy (reliability) for a large number of animals (available only under some conditions) |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_acc.html|accf90 (ver 1.66)]] |
| |
| ==== Genomic Analysis ==== | ==== Genomic Analysis ==== |
| |
| preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs | * [[readme.pregsf90|PreGSF90]]: Pre-analysis of genomic programs |
