faq
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
faq [2012/05/16 14:26] – shogo | faq [2014/07/11 11:20] – shogo | ||
---|---|---|---|
Line 1: | Line 1: | ||
- | ====== | + | ====== |
- | ==== Input files ==== | + | Download {{: |
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | ||
- | * [[http:// | + | * [[[[FAQ.data|data]] |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.pedigree|pedigree]] |
+ | * [[[[FAQ.parameter|parameter]] | ||
+ | * [[[[FAQ.example|examples]] | ||
==== Data preparation program ==== | ==== Data preparation program ==== | ||
- | * [[http:// | + | * [[[[readme.renumf90|renumf90]] |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.renum_example|examples]] |
- | + | ||
- | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== | + | |
- | + | ||
- | * [[http:// | + | |
- | * [[http:// | + | |
==== REML ==== | ==== REML ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.reml|remlf90]]: EM algorithm] |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.aireml|airemlf90]]: |
- | ==== Gibbs sampling | + | ==== Gibbs sampler |
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.gibbs1|gibbs1f90]]: |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.gibbs2|gibbs2f90]]: Useful with missing traits |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.gibbs3|gibbs3f90]]: |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.thrgibbs1|thrgibbs1f90]]: Threshold + linear model |
+ | * [[readme.thrgibbs3|thrgibbs3f90]]: Threshold + linear model with heterogeneous residual variances | ||
==== Post-Gibbs Analysis ==== | ==== Post-Gibbs Analysis ==== | ||
- | | + | |
==== BLUP ==== | ==== BLUP ==== | ||
- | blupf90 | + | |
- | blup90iod2 | + | |
- | | + | |
==== Accuracy ==== | ==== Accuracy ==== | ||
- | | + | |
==== Genomic Analysis ==== | ==== Genomic Analysis ==== | ||
- | | + | |
faq.txt · Last modified: 2024/05/17 18:17 by dani