faq
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faq [2012/05/16 14:32] – shogo | faq [2012/05/29 14:19] – shogo | ||
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- | ==== Input files ==== | + | ==== Frequent mistakes in data, pedigree, and parameter |
- | + | * [[[[FAQ.data|data]] | |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.pedigree|pedigree]] |
* [[http:// | * [[http:// | ||
+ | * [[[[FAQ.parameter|parameter]] | ||
+ | * [[http:// | ||
+ | * [[[[FAQ.example|examples]] | ||
+ | * [[http:// | ||
==== Data preparation program ==== | ==== Data preparation program ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[[[readme.renumf90|renumf90]] |
* [[http:// | * [[http:// | ||
- | |||
- | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== | ||
- | |||
- | * [[http:// | ||
- | * [[http:// | ||
==== REML ==== | ==== REML ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.reml|remlf90]]: EM algorithm |
- | * [[http:// | + | * [[http:// |
+ | * [[readme.aireml|airemlf90]]: Average Information REML + REMLF90 [[http:// | ||
- | ==== Gibbs sampling | + | ==== Gibbs sampler |
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.gibbs1|gibbs1f90]]: |
- | * [[http:// | + | * [[http:// |
- | * [[http:// | + | * [[readme.gibbs2|gibbs2f90]]: |
- | * [[http:// | + | * [[http:// |
+ | * [[readme.gibbs3|gibbs3f90]]: Heterogeneous residual variances | ||
+ | * [[http:// | ||
+ | * [[readme.thrgibbs1|thrgibbs1f90]]: Threshold model + linear model | ||
==== Post-Gibbs Analysis ==== | ==== Post-Gibbs Analysis ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.postgibbs|postgibbsf90]]: |
==== BLUP ==== | ==== BLUP ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.blupf90|blupf90]]: |
- | * [[http:// | + | * [[http:// |
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.pcg2|blup90iod2]]: BLUP for a large number of equations (available only under some conditions) |
+ | * [[readme.thr1pcg|cblup90iod]]: BLUP with threshold | ||
==== Accuracy ==== | ==== Accuracy ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.acc|accf90]]: Accuracy (reliability) for a large number of animals (available only under some conditions) |
==== Genomic Analysis ==== | ==== Genomic Analysis ==== | ||
- | * [[http://nce.ads.uga.edu/ | + | * [[readme.pregsf90|PreGSF90]]: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani