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faq [2012/05/16 14:38] – shogo | faq [2012/05/28 13:33] – shogo |
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==== Data preparation program ==== | ==== Data preparation program ==== |
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* [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.92)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.98)]] |
* [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] |
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* [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]]: EM algorithm | * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]]: EM algorithm |
* [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|airemlf90 (ver 1.101)]]: Average Information REML + REMLF90 - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_aireml.html|airemlf90 (ver 1.101)]]: Average Information REML + REMLF90 - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] |
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==== Gibbs sampling ==== | ==== Gibbs sampling ==== |
* [[http://nce.ads.uga.edu/html/projects/FAQ_blup.html|blupf90 (ver 1.45)]]: SOR, FSPAK or PCG - PDF | * [[http://nce.ads.uga.edu/html/projects/FAQ_blup.html|blupf90 (ver 1.45)]]: SOR, FSPAK or PCG - PDF |
* [[http://nce.ads.uga.edu/html/projects/FAQ_pcg2.html|blup90iod2 (ver 3.81)]]: For a large number of equations (available only under some conditions) | * [[http://nce.ads.uga.edu/html/projects/FAQ_pcg2.html|blup90iod2 (ver 3.81)]]: For a large number of equations (available only under some conditions) |
* [[http://nce.ads.uga.edu/html/projects/FAQ_cblup90iod2.html|cblup90iod2 (ver 3.16)]]: Threshold model + linear model for a large number of equations (available only under some conditions) | * [[http://nce.ads.uga.edu/html/projects/FAQ_cblup90iod2.html|cblup90iod2 (ver 3.17)]]: Threshold model + linear model for a large number of equations (available only under some conditions) |
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==== Accuracy ==== | ==== Accuracy ==== |
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* [[http://nce.ads.uga.edu/html/projects/FAQ_acc.html|accf90 (ver 1.66)]]: Accuracy (reliability) for a large number of animals (available only under some conditions) | * [[http://nce.ads.uga.edu/html/projects/FAQ_acc.html|accf90 (ver 1.66)]]: Accuracy (reliability) for a large number of animals (available only under some conditions) |
| * [[readme.acc|accf90]]: Accuracy (reliability) for a large number of animals (available only under some conditions) |
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==== Genomic Analysis ==== | ==== Genomic Analysis ==== |
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* [[http://nce.ads.uga.edu/html/projects/FAQ_preGS.html|preGSf90 (ver 1.6)]]: Pre-analysis of genomic programs | * [[readme.pregsf90|PreGSF90]]: Pre-analysis of genomic programs |
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