faq
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faq [2012/05/28 14:31] – ignacio | faq [2014/05/28 12:30] – shogo | ||
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- | ====== | + | ====== |
- | ==== Input files ==== | + | Download {{: |
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | ||
- | * [[http:// | + | * [[[[FAQ.data|data]] |
- | * [[http://nce.ads.uga.edu/ | + | * [[[[FAQ.pedigree|pedigree]] |
+ | * [[[[FAQ.parameter|parameter]] | ||
+ | * [[[[FAQ.example|examples]] | ||
==== Data preparation program ==== | ==== Data preparation program ==== | ||
* [[[[readme.renumf90|renumf90]] | * [[[[readme.renumf90|renumf90]] | ||
- | * [[http:// | + | * [[[[FAQ.renum_example|examples]] |
- | + | ||
- | ==== Frequent mistakes in a parameter file for BLUPF90 programs ==== | + | |
- | + | ||
- | * [[http:// | + | |
- | * [[http:// | + | |
==== REML ==== | ==== REML ==== | ||
- | * [[readme.reml|remlf90]]: | + | * [[readme.reml|remlf90]]: |
- | * [[http:// | + | * [[readme.aireml|airemlf90]]: |
- | * [[readme.aireml|airemlf90]]: | + | |
- | * [[http:// | + | |
==== Gibbs sampler ==== | ==== Gibbs sampler ==== | ||
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) |
* [[readme.gibbs1|gibbs1f90]]: | * [[readme.gibbs1|gibbs1f90]]: | ||
- | | + | * [[readme.gibbs2|gibbs2f90]]: |
- | | + | * [[readme.gibbs3|gibbs3f90]]: |
- | * [[http:// | + | * [[readme.thrgibbs1|thrgibbs1f90]]: |
- | * [[readme.gibbs3|gibbs3f90]]: | + | * [[readme.thrgibbs3|thrgibbs3f90]]: Threshold + linear model with heterogeneous residual variances |
- | * [[http:// | + | |
- | * [[readme.thrgibbs1|thrgibbs1f90]]: | + | |
- | * [[http://nce.ads.uga.edu/ | + | |
==== Post-Gibbs Analysis ==== | ==== Post-Gibbs Analysis ==== | ||
- | * [[readme.postgibbs|postgibbsf90]]: | + | * [[readme.postgibbs|postgibbsf90]]: |
- | * [[http:// | + | |
==== BLUP ==== | ==== BLUP ==== | ||
- | * [[readme.blupf90|blupf90]]: | + | * [[readme.blupf90|blupf90]]: |
- | * [[http:// | + | |
* [[readme.pcg2|blup90iod2]]: | * [[readme.pcg2|blup90iod2]]: | ||
- | | + | * [[readme.thr1pcg|cblup90iod]]: |
- | | + | |
- | * [[http:// | + | |
==== Accuracy ==== | ==== Accuracy ==== | ||
* [[readme.acc|accf90]]: | * [[readme.acc|accf90]]: | ||
- | * [[http:// | ||
==== Genomic Analysis ==== | ==== Genomic Analysis ==== | ||
- | * [[readme.pregsf90|PreGSF90]]: Pre-analysis of genomic programs | + | * [[readme.pregsf90|preGSf90]]: Pre-analysis of genomic programs |
faq.txt · Last modified: 2024/05/17 18:17 by dani