faq
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faq [2012/05/30 12:36] – shogo | faq [2022/05/10 21:45] – [FAQ: examples and options for BLUPF90 family programs] dani | ||
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- | ====== | + | ====== |
- | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs ==== | + | Download {{: |
+ | |||
+ | ==== Technical problems and segmentation fault ==== | ||
+ | |||
+ | * [[FAQ.segfault|Segmentation Fault]]: Received a message with " | ||
+ | * [[FAQ.windows|System Error]]: Received a message like "The program can't start because libiomp5md.dll is missing..." | ||
+ | * [[FAQ.openmp|Better settings for OpenMP]]: How should I define the number of threads used with a program? | ||
+ | * [[FAQ.intellibs|Installation of Intel Libraries]]: | ||
+ | |||
+ | ==== Variance Components ==== | ||
+ | |||
+ | * [[FAQ.vc#I got weird messages and nonsense estimates in AI REML. What is it?|I got weird messages and nonsense estimates in AI REML. What is it?]] | ||
+ | |||
+ | ==== Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs | ||
* [[[[FAQ.data|data]] | * [[[[FAQ.data|data]] | ||
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* [[[[FAQ.example|examples]] | * [[[[FAQ.example|examples]] | ||
- | ==== Data preparation program | + | ==== Individual program ==== |
+ | |||
+ | === Data preparation program === | ||
* [[[[readme.renumf90|renumf90]] | * [[[[readme.renumf90|renumf90]] | ||
* [[[[FAQ.renum_example|examples]] | * [[[[FAQ.renum_example|examples]] | ||
- | * [[http:// | ||
- | ==== REML ==== | + | === REML === |
- | * [[readme.reml|remlf90]]: | + | * [[readme.reml|remlf90]]: |
- | * [[readme.aireml|airemlf90]]: | + | * [[readme.aireml|airemlf90]]: |
+ | * [[readme.blupf90new|blupf90test]]: | ||
- | ==== Gibbs sampler | + | === Gibbs sampler === |
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | + | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed (known) |
* [[readme.gibbs1|gibbs1f90]]: | * [[readme.gibbs1|gibbs1f90]]: | ||
- | * [[readme.gibbs2|gibbs2f90]]: | + | * [[readme.gibbs2|gibbs2f90]]: |
- | * [[readme.gibbs3|gibbs3f90]]: | + | * [[readme.gibbs3|gibbs3f90]]: |
- | * [[readme.thrgibbs1|thrgibbs1f90]]: | + | * [[readme.thrgibbs1|thrgibbs1f90]]: |
+ | * [[readme.thrgibbs3|thrgibbs3f90]]: | ||
+ | * [[readme.gibbsf90new|gibbsf90test]]: | ||
+ | * [[faq.gibbs|General questions]]: | ||
- | ==== Post-Gibbs Analysis | + | === Post-Gibbs Analysis === |
- | * [[readme.postgibbs|postgibbsf90]]: | + | * [[readme.postgibbs|postgibbsf90]]: |
- | ==== BLUP ==== | + | === BLUP === |
- | * [[readme.blupf90|blupf90]]: | + | * [[readme.blupf90|blupf90]]: |
- | * [[readme.pcg2|blup90iod2]]: | + | * [[readme.blupf90new|blupf90test]]: |
- | * [[readme.thr1pcg|cblup90iod]]: BLUP with threshold | + | * [[readme.predictf90|predictf90]]: Calculates y-hat |
+ | * [[readme.pcg2|blup90iod2]]: | ||
+ | * [[readme.pcg2r|blup90iod2r]]: | ||
+ | * [[readme.pcg2hr|blup90iod2hr]]: | ||
+ | * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions) | ||
+ | * [[blup90mbe2]]: | ||
- | ==== Accuracy | + | === Accuracy |
* [[readme.acc|accf90]]: | * [[readme.acc|accf90]]: | ||
+ | * [[readme.accgs|accf90GS]]: | ||
+ | |||
+ | === Genomic Analysis === | ||
- | ==== Genomic Analysis ==== | + | * [[readme.pregsf90|preGSf90]]: |
+ | * [[readme.pregsf90|postGSf90]]: | ||
+ | * [[readme.predf90|predf90]]: | ||
- | * [[readme.pregsf90|PreGSF90]]: | ||
faq.txt · Last modified: 2024/05/17 18:17 by dani