Differences

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--- faq [2018/03/13 21:35] – dani
+++ faq [2018/07/09 19:21] – [Genomic Analysis] shogo
@@ Line 31: / Line 31: @@
 ==== Post-Gibbs Analysis ====
-    * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for convergence diagnosis and post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs)
+    * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for convergence diagnosis and post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs). The graphs are created with gnuplot, which must be pre-installed.
 ==== BLUP ====
@@ Line 39: / Line 38: @@
     * [[readme.pcg2r|blup90iod2r]]: (G)BLUP with GIBBS3F90-type heterogeneous residual variance for a large number of equations (available only under some conditions)
     * [[readme.pcg2hr|blup90iod2hr]]: (G)BLUP with AIREMLF90-type heterogeneous residual variance for a large number of equations (available only under some conditions)
-    * [[readme.thr1pcg|cblup90iod2]]: BLUP with threshold + linear model for a large number of equations (available only under some conditions)
+    * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions)
+    * [[blup90mbe2]]: (G)BLUP for a large number of equations for multi-breed evaluations (available only under some conditions). The prior external EBV can be from other breeds, lines, foreign origins, ...
 ==== Accuracy (approximation) ====
@@ Line 49: / Line 49: @@
     * [[readme.pregsf90|preGSf90]]: Pre-analysis of genomic programs with options, including options for postGSf90 (GWAS)
+    * [[readme.pregsf90|postGSf90]]: Post-analysis of genomic programs with options (GWAS)
+    * [[readme.predf90|predf90]]: Prediction of EBV using only SNP
 ==== Technical problems in Windows / Linux ====