Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision |
faq [2018/04/01 21:51] – [Post-Gibbs Analysis] shogo | faq [2018/07/09 19:24] – [BLUP] shogo |
---|
| |
* [[readme.blupf90|blupf90]]: (G)BLUP with SOR, FSPAK or PCG | * [[readme.blupf90|blupf90]]: (G)BLUP with SOR, FSPAK or PCG |
| * [[readme.predictf90|predictf90]]: Calculates y-hat |
* [[readme.pcg2|blup90iod2]]: (G)BLUP for a large number of equations (available only under some conditions) | * [[readme.pcg2|blup90iod2]]: (G)BLUP for a large number of equations (available only under some conditions) |
* [[readme.pcg2r|blup90iod2r]]: (G)BLUP with GIBBS3F90-type heterogeneous residual variance for a large number of equations (available only under some conditions) | * [[readme.pcg2r|blup90iod2r]]: (G)BLUP with GIBBS3F90-type heterogeneous residual variance for a large number of equations (available only under some conditions) |
* [[readme.pcg2hr|blup90iod2hr]]: (G)BLUP with AIREMLF90-type heterogeneous residual variance for a large number of equations (available only under some conditions) | * [[readme.pcg2hr|blup90iod2hr]]: (G)BLUP with AIREMLF90-type heterogeneous residual variance for a large number of equations (available only under some conditions) |
* [[readme.thr1pcg|cblup90iod2]]: BLUP with threshold + linear model for a large number of equations (available only under some conditions) | * [[readme.thr1pcg|cblup90iod2]]: (G)BLUP with threshold + linear model for a large number of equations (available only under some conditions) |
| * [[blup90mbe2]]: (G)BLUP for a large number of equations for multi-breed evaluations (available only under some conditions). The prior external EBV can be from other breeds, lines, foreign origins, ... |
==== Accuracy (approximation) ==== | ==== Accuracy (approximation) ==== |
| |
| |
* [[readme.pregsf90|preGSf90]]: Pre-analysis of genomic programs with options, including options for postGSf90 (GWAS) | * [[readme.pregsf90|preGSf90]]: Pre-analysis of genomic programs with options, including options for postGSf90 (GWAS) |
| * [[readme.pregsf90|postGSf90]]: Post-analysis of genomic programs with options (GWAS) |
| * [[readme.predf90|predf90]]: Prediction of EBV using only SNP |
| |
==== Technical problems in Windows / Linux ==== | ==== Technical problems in Windows / Linux ==== |